GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000598-TA|BGIBMGA000598-PA|undefined
         (72 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK027303-1|BAB55027.1|  165|Homo sapiens protein ( Homo sapiens ...    27   9.3  

>AK027303-1|BAB55027.1|  165|Homo sapiens protein ( Homo sapiens
          cDNA FLJ14397 fis, clone HEMBA1003480. ).
          Length = 165

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 35 INKMASSYLKHILQNGVWFSVDFGLR 60
          +  +  ++L HIL +G+WFS+   L+
Sbjct: 61 LTAIVGAWLDHILTHGIWFSLQGALQ 86


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.130    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,988,945
Number of Sequences: 224733
Number of extensions: 248492
Number of successful extensions: 520
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 1
length of query: 72
length of database: 73,234,838
effective HSP length: 51
effective length of query: 21
effective length of database: 61,773,455
effective search space: 1297242555
effective search space used: 1297242555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)