GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000598-TA|BGIBMGA000598-PA|undefined
         (72 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061318-1|AAL28866.1|  331|Drosophila melanogaster LD23604p pro...    26   7.3  
AE014298-2747|AAF48866.1|  331|Drosophila melanogaster CG6540-PA...    26   7.3  
AE014134-3356|AAF53976.2|  776|Drosophila melanogaster CG9241-PA...    26   7.3  

>AY061318-1|AAL28866.1|  331|Drosophila melanogaster LD23604p
           protein.
          Length = 331

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 20  PQNGVWFSVTYGLRKINKMASSYLKHILQNGVWFSV 55
           PQNG W  V Y  R  +  A +Y + I+   V   V
Sbjct: 223 PQNGNWMYVRYSSRIESDKALNYNEKIIAGNVMVGV 258


>AE014298-2747|AAF48866.1|  331|Drosophila melanogaster CG6540-PA
           protein.
          Length = 331

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 20  PQNGVWFSVTYGLRKINKMASSYLKHILQNGVWFSV 55
           PQNG W  V Y  R  +  A +Y + I+   V   V
Sbjct: 223 PQNGNWMYVRYSSRIESDKALNYNEKIIAGNVMVGV 258


>AE014134-3356|AAF53976.2|  776|Drosophila melanogaster CG9241-PA
           protein.
          Length = 776

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 11  IASRSLMQNPQNGVWFSVTYGLRKINKMASSYL 43
           +AS S    P + V+    +GLR IN + SS L
Sbjct: 173 VASTSQSSAPVSAVFTDPVFGLRMINPLVSSSL 205


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.130    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,907
Number of Sequences: 52641
Number of extensions: 84066
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 3
length of query: 72
length of database: 24,830,863
effective HSP length: 52
effective length of query: 20
effective length of database: 22,093,531
effective search space: 441870620
effective search space used: 441870620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)