Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000598-TA|BGIBMGA000598-PA|undefined
(72 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003138-5|AAL77178.1| 488|Caenorhabditis elegans Hypothetical ... 26 3.7
AF003138-4|ABD94108.1| 400|Caenorhabditis elegans Hypothetical ... 26 3.7
AF003138-3|AAM15568.1| 504|Caenorhabditis elegans Hypothetical ... 26 3.7
AF003138-2|AAM15567.1| 546|Caenorhabditis elegans Hypothetical ... 26 3.7
Z47809-7|CAA87783.1| 662|Caenorhabditis elegans Hypothetical pr... 25 4.9
Z47808-10|CAA87778.1| 662|Caenorhabditis elegans Hypothetical p... 25 4.9
AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical... 25 8.5
AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical... 25 8.5
AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical... 25 8.5
AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conduct... 25 8.5
AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conduct... 25 8.5
AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conduct... 25 8.5
>AF003138-5|AAL77178.1| 488|Caenorhabditis elegans Hypothetical
protein F12B6.2b protein.
Length = 488
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 28 VTYGLRKINKMASSYLKHILQNGVWFSVDFGLRRIYKM 65
VTY L K N++A + ++ NG+W S+ F ++ I K+
Sbjct: 242 VTY-LPKYNQIA--FKMNLTHNGIWSSLPFFIQMITKL 276
>AF003138-4|ABD94108.1| 400|Caenorhabditis elegans Hypothetical
protein F12B6.2d protein.
Length = 400
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 28 VTYGLRKINKMASSYLKHILQNGVWFSVDFGLRRIYKM 65
VTY L K N++A + ++ NG+W S+ F ++ I K+
Sbjct: 284 VTY-LPKYNQIA--FKMNLTHNGIWSSLPFFIQMITKL 318
>AF003138-3|AAM15568.1| 504|Caenorhabditis elegans Hypothetical
protein F12B6.2c protein.
Length = 504
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 28 VTYGLRKINKMASSYLKHILQNGVWFSVDFGLRRIYKM 65
VTY L K N++A + ++ NG+W S+ F ++ I K+
Sbjct: 242 VTY-LPKYNQIA--FKMNLTHNGIWSSLPFFIQMITKL 276
>AF003138-2|AAM15567.1| 546|Caenorhabditis elegans Hypothetical
protein F12B6.2a protein.
Length = 546
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 28 VTYGLRKINKMASSYLKHILQNGVWFSVDFGLRRIYKM 65
VTY L K N++A + ++ NG+W S+ F ++ I K+
Sbjct: 284 VTY-LPKYNQIA--FKMNLTHNGIWSSLPFFIQMITKL 318
>Z47809-7|CAA87783.1| 662|Caenorhabditis elegans Hypothetical
protein D2013.9 protein.
Length = 662
Score = 25.4 bits (53), Expect = 4.9
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 4 SSLMQNEIASRSLMQNPQNGVWFSVTYGLR-KINKMASSYLKHIL--QNGVWFSVDFGLR 60
S + ++ + M++P W+ +TY L ++ + + + L Q+ VW + L
Sbjct: 387 SCITVKDLLAACAMRDPAKNDWYQLTYNLNTQLPEFVARFQNRELNGQHNVWIVKPWNLA 446
Query: 61 RIYKMT 66
R MT
Sbjct: 447 RGMDMT 452
>Z47808-10|CAA87778.1| 662|Caenorhabditis elegans Hypothetical
protein D2013.9 protein.
Length = 662
Score = 25.4 bits (53), Expect = 4.9
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 4 SSLMQNEIASRSLMQNPQNGVWFSVTYGLR-KINKMASSYLKHIL--QNGVWFSVDFGLR 60
S + ++ + M++P W+ +TY L ++ + + + L Q+ VW + L
Sbjct: 387 SCITVKDLLAACAMRDPAKNDWYQLTYNLNTQLPEFVARFQNRELNGQHNVWIVKPWNLA 446
Query: 61 RIYKMT 66
R MT
Sbjct: 447 RGMDMT 452
>AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical
protein Y51A2D.19c protein.
Length = 1131
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 11 IASRSLMQNPQNGVWFSVTYG 31
IA SL NP +GV + TYG
Sbjct: 1043 IAQISLQDNPYDGVVHNTTYG 1063
>AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical
protein Y51A2D.19b protein.
Length = 1118
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 11 IASRSLMQNPQNGVWFSVTYG 31
IA SL NP +GV + TYG
Sbjct: 1030 IAQISLQDNPYDGVVHNTTYG 1050
>AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical
protein Y51A2D.19a protein.
Length = 1140
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 11 IASRSLMQNPQNGVWFSVTYG 31
IA SL NP +GV + TYG
Sbjct: 1052 IAQISLQDNPYDGVVHNTTYG 1072
>AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conductance
calcium-activatedpotassium channel SLO-1c protein.
Length = 1131
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 11 IASRSLMQNPQNGVWFSVTYG 31
IA SL NP +GV + TYG
Sbjct: 1043 IAQISLQDNPYDGVVHNTTYG 1063
>AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conductance
calcium-activatedpotassium channel SLO-1b protein.
Length = 1118
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 11 IASRSLMQNPQNGVWFSVTYG 31
IA SL NP +GV + TYG
Sbjct: 1030 IAQISLQDNPYDGVVHNTTYG 1050
>AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conductance
calcium-activatedpotassium channel SLO-1a protein.
Length = 1140
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 11 IASRSLMQNPQNGVWFSVTYG 31
IA SL NP +GV + TYG
Sbjct: 1052 IAQISLQDNPYDGVVHNTTYG 1072
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.321 0.130 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,511,871
Number of Sequences: 27539
Number of extensions: 43627
Number of successful extensions: 109
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 18
length of query: 72
length of database: 12,573,161
effective HSP length: 52
effective length of query: 20
effective length of database: 11,141,133
effective search space: 222822660
effective search space used: 222822660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)
- SilkBase 1999-2023 -