GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000598-TA|BGIBMGA000598-PA|undefined
         (72 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containi...    26   2.7  
At1g18260.1 68414.m02277 suppressor of lin-12-like protein-relat...    26   3.5  
At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein si...    25   4.6  
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)...    25   4.6  
At3g24880.1 68416.m03120 expressed protein                             25   6.1  
At3g24870.1 68416.m03119 expressed protein                             25   6.1  

>At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 852

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/36 (30%), Positives = 22/36 (61%)

Query: 3   FSSLMQNEIASRSLMQNPQNGVWFSVTYGLRKINKM 38
           F+S++  ++ S+ +  N + G   SV Y L++I K+
Sbjct: 118 FASMVDYDLLSKGISSNLRQGKIESVVYTLKRIEKV 153


>At1g18260.1 68414.m02277 suppressor of lin-12-like protein-related
           / sel-1 protein-related similar to Sel-1 homolog
           precursor (Suppressor of lin-12-like protein)
           (Sel-1L)(SP:Q9UBV2) {Homo sapiens}
          Length = 678

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 26  FSVTYGLRKINKMASSYLKHILQNGVWFSV 55
           F    GL+K  +MA+S+ K + + G W S+
Sbjct: 398 FHTGVGLKKNLEMATSFYKLVAERGPWSSL 427


>At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein
           similar to alpha-glucosidase II from SP:Q9F234 [Bacillus
           thermoamyloliquefaciens]; contains Pfam profile: PF01055
           Glycosyl hydrolases family 31
          Length = 991

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 35  INKMASSYLKHILQNGVWFSVDF 57
           ++   S  L+HIL  G+W   DF
Sbjct: 566 LSSQGSHELQHILPRGIWHRFDF 588


>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
           similar to RNA helicase GI:3776015 from [Arabidopsis
           thaliana]; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00270: DEAD/DEAH box
           helicase; matches EST OAO811-2
          Length = 581

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 37  KMASSYLKHILQNGVWFSVDF 57
           K A   LKH+ Q+ VW S +F
Sbjct: 368 KTAGGILKHMFQDAVWVSGNF 388


>At3g24880.1 68416.m03120 expressed protein
          Length = 1957

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 31  GLRKINKMASSYLKHILQNGVWFSVDFGLRRIYKMTSGS 69
           G   +     S    +L+   W + DF   R++KMT+ +
Sbjct: 564 GTAPVEVREKSQWDFVLEEMAWLANDFAQERLWKMTAAA 602


>At3g24870.1 68416.m03119 expressed protein
          Length = 1841

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 31  GLRKINKMASSYLKHILQNGVWFSVDFGLRRIYKMTSGS 69
           G   +     S    +L+   W + DF   R++KMT+ +
Sbjct: 559 GTAPVEVREKSQWDFVLEEMAWLANDFAQERLWKMTAAT 597


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.130    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,478,501
Number of Sequences: 28952
Number of extensions: 42074
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96
Number of HSP's gapped (non-prelim): 6
length of query: 72
length of database: 12,070,560
effective HSP length: 52
effective length of query: 20
effective length of database: 10,565,056
effective search space: 211301120
effective search space used: 211301120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)