Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000597-TA|BGIBMGA000597-PA|IPR004142|Ndr
         (209 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    30   0.29 
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    27   2.0  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    27   2.0  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    26   3.5  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   3.5  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    26   4.6  

>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 86  DYLLWHHFGRFPEDRNHDLTQMYKNYFTRNVNPSNLSMF 124
           D+ LW H G   +    DL   +KN   ++VN  NL  F
Sbjct: 68  DHHLWGHCGARLKHTQSDLIDRFKNANLKSVNEENLKKF 106


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
          Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 35 VLARFALIHPKKVDALTLINCTSNQAGWIEWAYQKMNTR 73
          VLA F L+    ++AL  I+   ++  WIEW Y+   T+
Sbjct: 32 VLAFFCLLGLDLLNALNTID-DDDKKSWIEWIYKNYVTK 69


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 39  FALIH-PKKVDALTLINCTSNQAGWIE-WAYQKMNTRSLRSR 78
           F LI  PK++  L LI CT +   W    AY    TR LR R
Sbjct: 351 FPLISSPKEMAWLLLIVCTDSNESWFPVHAYINTKTRILRPR 392


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 108 YKNYFTRNVNPSNLSMFIEAYVRRSDLGICRNADTIKVPVLNITGALSP 156
           ++NY   + NPSN    +  +V   +L +   +DT   P+  I  + +P
Sbjct: 605 FRNYENYDANPSNFHPVVPGFVSSPNLHLAGGSDT---PIYCIEHSFTP 650


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 48  DALTLINCTSNQAGWIEWAYQKMNTRSLRSRGM 80
           ++ TLIN  S  +GW++  +Q+++ + L  + M
Sbjct: 748 ESFTLINTVSLVSGWLKMLHQRIDYKILTEKVM 780


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 108 YKNYFTRNVNPSNLSMFIEAYVRRSDLGICRNADTIKVP 146
           Y NY T+ V  +  S+F +A+  +  L  C N  T  +P
Sbjct: 893 YANYLTKKVFEALRSLFTQAHEIQDWLSACCNLITHSLP 931


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 999,408
Number of Sequences: 5004
Number of extensions: 41386
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 8
length of query: 209
length of database: 2,362,478
effective HSP length: 70
effective length of query: 139
effective length of database: 2,012,198
effective search space: 279695522
effective search space used: 279695522
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)