Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000597-TA|BGIBMGA000597-PA|IPR004142|Ndr
(209 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0653 - 4981517-4981738,4981841-4981976,4982066-4982121,498... 71 9e-13
06_03_0479 - 21289903-21290124,21290207-21290342,21290435-212904... 69 3e-12
02_02_0121 + 7005356-7005418,7007533-7007632,7007713-7007810,700... 67 1e-11
05_02_0031 - 5832475-5832696,5832789-5833064,5833303-5833380,583... 63 1e-10
10_08_0364 + 17217631-17217833,17218134-17218308,17218391-172184... 36 0.032
01_01_0620 - 4621291-4621379,4621722-4621803,4622238-4622282,462... 36 0.032
12_01_1076 + 11184047-11184270,11186178-11186352,11186554-111866... 33 0.17
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074... 31 0.90
02_05_0977 - 33239887-33240566,33241010-33241985 30 1.2
01_05_0811 - 25438713-25438857,25438974-25439221,25439428-254396... 30 1.2
11_06_0129 - 20397179-20397537,20397749-20400497 30 1.6
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 29 2.1
05_06_0042 - 25131962-25132149,25132261-25132345,25132750-251327... 29 2.7
02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678 29 3.6
01_01_0942 + 7428384-7429536,7429623-7430335 29 3.6
01_03_0020 - 11698429-11699126,11699557-11700532 28 4.8
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 28 6.3
05_07_0175 - 28164252-28164529,28165381-28166560 28 6.3
04_01_0245 + 3209755-3209798,3209852-3210398 28 6.3
01_03_0023 + 11731990-11732185,11732672-11733363 27 8.4
>01_01_0653 -
4981517-4981738,4981841-4981976,4982066-4982121,
4982228-4982284,4982373-4982450,4982533-4982619,
4982707-4982767,4982862-4982950,4983048-4983145,
4983242-4983341,4983983-4984042
Length = 347
Score = 70.5 bits (165), Expect = 9e-13
Identities = 57/207 (27%), Positives = 90/207 (43%), Gaps = 8/207 (3%)
Query: 3 PSMDELANQLNYVMGHFGIKTFIGFGVGAGANVLARFALIHPKKVDALTLINCTSNQAGW 62
PS+DEL +Q+ V+ FG+ + + GV AGA +L FA + +V L L++ W
Sbjct: 99 PSVDELVDQVADVLDFFGLGSVMCLGVTAGAYILTLFATKYRDRVIGLMLVSPLCKAPSW 158
Query: 63 IEWAYQKMNTRSLRSRGMTQGVLDYLLWHHFGR----FPEDRNHDLTQMYKNYFTRNVNP 118
EW Y K+ L G V + LL +F +D ++ Q ++
Sbjct: 159 SEWLYNKVLLNLLYYYGSRGLVKECLLQRYFSTEVRGNGQDPESEIVQACRSLLHER-QG 217
Query: 119 SNLSMFIEAYVRRSDLGICRNADTIKVPVLNITGALSPHVDDTVTFNGRLNPNNSTWMKI 178
SN+ F++A R DL ++ L G S DD V +L+ +++
Sbjct: 218 SNVWRFLQAINERHDL--TEALKKLQCRTLIFVGENSQFHDDAVHMTTKLDRRYCALVEV 275
Query: 179 SDC-AMVLEEQPSKISEAFRLFLQGEG 204
C ++V EEQP + FL G G
Sbjct: 276 QACGSLVTEEQPHAMLIPMEYFLMGYG 302
>06_03_0479 -
21289903-21290124,21290207-21290342,21290435-21290490,
21290734-21290811,21290902-21290988,21291067-21291127,
21291220-21291308,21291448-21291545,21291655-21291754,
21293968-21294030
Length = 329
Score = 68.9 bits (161), Expect = 3e-12
Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 19/202 (9%)
Query: 4 SMDELANQLNYVMGHFGIKTFIGFGVGAGANVLARFALIHPKKVDALTLINCTSNQAGWI 63
S+DELA+Q++ V+ FG+ + GV AGA +L FA + ++V L L++ W
Sbjct: 101 SVDELADQVSDVLDFFGLGPVMCLGVTAGAYILTLFATKYRERVLGLILVSPLCRTPSWT 160
Query: 64 EWAYQKMNTRSLRSRGMTQGVLDYLLWHHFGRFPEDRNHDLTQMYKNYFTRNVNPSNLSM 123
EW + K+ + L GM V D LL +F +F + R N+
Sbjct: 161 EWFHNKVMSNLLYYYGMCNMVKDCLLQRYFSKFLDQR----------------QSMNVWR 204
Query: 124 FIEAYVRRSDLGICRNADTIKVPVLNITGALSPHVDDTVTFNGRLNPNNSTWMKISDC-A 182
FI R DL + ++ L G S + V +L+ S +++ C +
Sbjct: 205 FIHTINERHDL--TESLKELQCRTLIFVGQNSQFHAEAVHMTSKLDERYSALVEVQGCGS 262
Query: 183 MVLEEQPSKISEAFRLFLQGEG 204
+V EEQP + FL G G
Sbjct: 263 VVTEEQPHAMLMPLEYFLMGYG 284
>02_02_0121 +
7005356-7005418,7007533-7007632,7007713-7007810,
7007933-7008021,7008111-7008171,7008253-7008339,
7008409-7008486,7008583-7008639,7008731-7008786,
7008877-7009012,7009103-7009324
Length = 348
Score = 66.9 bits (156), Expect = 1e-11
Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 8/207 (3%)
Query: 3 PSMDELANQLNYVMGHFGIKTFIGFGVGAGANVLARFALIHPKKVDALTLINCTSNQAGW 62
PS+D+LA+Q+ V+ FG+ + + GV AGA +L FA + +V L L++ W
Sbjct: 100 PSVDDLADQVADVLDFFGLGSVMCLGVSAGAYILTLFAAKYRDRVLGLILVSPLCKPPTW 159
Query: 63 IEWAYQKMNTRSLRSRGMTQGVLDYLLWHHFGR----FPEDRNHDLTQMYKNYFTRNVNP 118
EW Y K+ + L GM V + LL +F + + D+ Q ++ +
Sbjct: 160 TEWFYNKVASNLLYYYGMCGLVKEGLLQRYFSKEVRGCSDLPESDIVQACRSLLDQR-QS 218
Query: 119 SNLSMFIEAYVRRSDLGICRNADTIKVPVLNITGALSPHVDDTVTFNGRLNPNNSTWMKI 178
N+ F++ R DL + ++ L G S + V +L+ +++
Sbjct: 219 MNVWRFVQTMNMRYDL--TEDLKQLQCRTLIFVGEYSQFHTEAVHMTSKLDRRYCALVEV 276
Query: 179 SDC-AMVLEEQPSKISEAFRLFLQGEG 204
C +++ EEQP + F G G
Sbjct: 277 QACGSLITEEQPHAMLIPMEYFFMGYG 303
>05_02_0031 -
5832475-5832696,5832789-5833064,5833303-5833380,
5833464-5833550,5833639-5833699,5833792-5833880,
5834001-5834098,5834197-5834296,5834876-5834953
Length = 362
Score = 63.3 bits (147), Expect = 1e-10
Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 15/215 (6%)
Query: 3 PSMDELANQLNYVMGHFGIKTFIGFGVGAGANVLARFALIHPKKVDALTLINCTSNQAGW 62
PS+++LA+Q+ V+ FG+ + + GV AGA VL FA + ++V L L++ W
Sbjct: 105 PSVEDLADQVADVLDFFGLGSVMCLGVTAGAYVLTLFATKYRERVIGLMLVSPLCRAPSW 164
Query: 63 IEWAYQKMNTRSLRSRGMTQGVLDYLLWHHFGRFPEDRNHDLTQMYKNYFTRN------V 116
EW Y K+ + G V + LL +F + ++R + + + +
Sbjct: 165 SEWLYNKVLLNLIYYYGTRGLVKECLLQRYFSKLLDERQGENIWRFLHSINEYALPPLIL 224
Query: 117 NPSNLSMFI--EAY----VRRSDLGICRNADTIKVPVLNITGALSPHVDDTVTFNGRLNP 170
PS FI +Y +RR DL ++ L G S +D + +L+
Sbjct: 225 FPSQWEYFISWSSYKLHSIRRHDLTDALR--KLQCRTLIFVGENSQFHEDAIHMTTKLDK 282
Query: 171 NNSTWMKISDC-AMVLEEQPSKISEAFRLFLQGEG 204
+++ C ++V EEQP + FL G G
Sbjct: 283 RYCALVEVQGCGSLVTEEQPHAMLMPMEYFLMGYG 317
>10_08_0364 +
17217631-17217833,17218134-17218308,17218391-17218474,
17218561-17218802,17218883-17219108,17219246-17219325,
17219408-17219492,17219665-17219796,17219927-17220040,
17220123-17220170,17220413-17220497,17220722-17220834
Length = 528
Score = 35.5 bits (78), Expect = 0.032
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 110 NYFTRNVNPSNLSMFIEAYVRRSDLGICRNADTIKVPVLN 149
NY R++ P NL + ++R SD G+C+ D P LN
Sbjct: 231 NYIHRDIKPDNLLLDRHGHLRLSDFGLCKPLDYSNFPDLN 270
>01_01_0620 -
4621291-4621379,4621722-4621803,4622238-4622282,
4623701-4623892,4625224-4625337,4625430-4625561,
4626356-4626440,4626526-4626605,4626791-4627034,
4627376-4627617,4628232-4628315,4628427-4628601,
4629351-4629464,4630025-4630236
Length = 629
Score = 35.5 bits (78), Expect = 0.032
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 110 NYFTRNVNPSNLSMFIEAYVRRSDLGICRNADTIKVPVLN 149
NY R++ P NL + +++ SD G+C+ D K+ LN
Sbjct: 272 NYIHRDIKPDNLLLDKNGHMKLSDFGLCKPIDCSKLSTLN 311
>12_01_1076 +
11184047-11184270,11186178-11186352,11186554-11186637,
11186712-11186953,11187029-11187266,11187814-11187893,
11187968-11188052,11188148-11188279,11188358-11188471,
11189550-11189594,11189840-11189924,11190043-11190102,
11190178-11190317
Length = 567
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 110 NYFTRNVNPSNLSMFIEAYVRRSDLGICRNADTIKVPVLN 149
NY R++ P NL + +++ SD G+C+ D+ P L+
Sbjct: 238 NYIHRDIKPDNLLLDRTGHLKLSDFGLCKPLDSSSFPNLS 277
>05_06_0254 -
26706830-26706943,26707063-26707193,26707330-26707417,
26707970-26708087,26708184-26708332,26708787-26708840,
26708963-26709031,26709146-26709246,26709391-26709473,
26709846-26710041,26710171-26710279
Length = 403
Score = 30.7 bits (66), Expect = 0.90
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 2 YPSMDELANQLNYVMGHFGIKTFIGFGVGAGANVLARFALIHPKKVDALTLINCTSNQAG 61
Y S +A +M H G K FG GA + + A + P ++ +L L+N T
Sbjct: 100 YYSTVIMARDALALMDHLGWKKAHVFGHSMGAMISCKLAAMAPHRICSLALLNVTGGGFQ 159
Query: 62 W---IEWAYQKMNTRSLRSRGMTQGVLDYL 88
++ + R LR+R + L+YL
Sbjct: 160 CFPKLDGQMLSLAFRFLRARTPEERALEYL 189
>02_05_0977 - 33239887-33240566,33241010-33241985
Length = 551
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 155 SPHVDDTVTFNGRLNPNNSTWMKISDC 181
SP +DTVT GR +PN +T + I C
Sbjct: 414 SPGQEDTVTAQGRSDPNQNTGISIHRC 440
>01_05_0811 -
25438713-25438857,25438974-25439221,25439428-25439616,
25439771-25439924,25440012-25440157
Length = 293
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 28 GVGAGANVLARFALIHPKKVDALTLINCTSNQAGWIEW 65
G+GAG ++L R + + V ALT ++ T GW +W
Sbjct: 202 GLGAGTSILGRPWGPYSRVVFALTYMSSTVRPQGWDDW 239
>11_06_0129 - 20397179-20397537,20397749-20400497
Length = 1035
Score = 29.9 bits (64), Expect = 1.6
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 79 GMTQGVLDYLLWHHF--GRFPEDRNHDLTQMYKNYFTRNVNPSNLSMFIEAYVRRSDLGI 136
G Q + D L ++ G PE + L + F+RN + +FIE + S L +
Sbjct: 560 GQCQNLQDLTLQNNMLNGNIPEQLSQ-LKSLQTLDFSRNNLSGEIPIFIENFTMLSYLNL 618
Query: 137 CRNADTIKVPVLNITGALSPHVDDTVTFNGRLNPNNSTWMKISDCAMVLEEQPSK 191
N T +VP TG + ++ NGRL T + + C+ L + K
Sbjct: 619 SFNIFTGEVPT---TGIFTNSTAISIQHNGRL-CGGITTLHLPPCSSQLPKNKHK 669
>09_04_0247 +
16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 6 DELANQLNYVMGHFGIKTFIGFGVGAGANVLARFALIHPKKVDALTLINCTSNQAGWIEW 65
D++ + ++ T +G G G GAN+L ++ L+ + LT C N ++
Sbjct: 269 DDIGTAIRFINNKRPWTTLMGVGWGYGANMLTKY-LVEVGESTPLTAAVCVDNPFD-LQE 326
Query: 66 AYQKMNTRSLRSRGMTQGVLDYL 88
A + R +T G++D L
Sbjct: 327 ATRSFPHHIALDRKLTTGLVDIL 349
>05_06_0042 -
25131962-25132149,25132261-25132345,25132750-25132797,
25133084-25133197,25133279-25133410,25134029-25134124,
25134771-25135005,25135054-25135322,25135408-25135491,
25136529-25136703,25138018-25138229
Length = 545
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 115 NVNPSNLSMFIEAYVRRSDLGICRNADTIKVPVLN 149
++ P NL + +++ SD G+C+ D+ P LN
Sbjct: 248 DIKPDNLLLDRSGHLKLSDFGLCKPLDSSNFPNLN 282
>02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678
Length = 258
Score = 28.7 bits (61), Expect = 3.6
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 81 TQGVLDYLLWHHFGRFPEDRNHDLTQMYKNYFTRNVNPSNLSMFIEAYVRRSDLGICRNA 140
T V D LLW ++ + MY+ R + N SM++ R SDL +N
Sbjct: 133 TSPVPDTLLWG----LATNKKYTTKSMYRTLTFRGIRELNTSMWLSVKSRVSDLFSKKNL 188
Query: 141 DTIKVPVLNITGALSPHVDDTVTFNGRLNPNNSTWMKIS 179
D I + +++ + F+G NP W++ S
Sbjct: 189 DDIDADLERFLHERFKNLNIVLFFSG--NP-PYRWLRFS 224
>01_01_0942 + 7428384-7429536,7429623-7430335
Length = 621
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 156 PHVDDTVTFNGRLNPNNSTWMKISDCAMV 184
P ++TVT GR +PN ST + + C ++
Sbjct: 474 PGQENTVTAQGRRDPNQSTGISVHGCRLL 502
>01_03_0020 - 11698429-11699126,11699557-11700532
Length = 557
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 160 DTVTFNGRLNPNNSTWMKISDCAMV 184
+TVT GR +PN +T I CA+V
Sbjct: 419 NTVTAQGRTDPNQNTGTTIQGCAIV 443
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/62 (20%), Positives = 25/62 (40%)
Query: 114 RNVNPSNLSMFIEAYVRRSDLGICRNADTIKVPVLNITGALSPHVDDTVTFNGRLNPNNS 173
R++ PSN+ + + D G+ R D + P + ++D GR N +
Sbjct: 578 RDIKPSNIMLDAAFNAKLGDFGLARLVDHGRGPHTTVLAGTMGYMDPECMITGRANAESD 637
Query: 174 TW 175
+
Sbjct: 638 AY 639
>05_07_0175 - 28164252-28164529,28165381-28166560
Length = 485
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 158 VDDTVTFNGRLNPNNSTWMKISDCAMVLEEQPSKISEAFRLFLQGE 203
++D + + G N S W + +C + L + ++ + +RLFL E
Sbjct: 203 MEDVIYYQGAFN-FLSIWRNVLECRLTLHQGVLQVHQKWRLFLPQE 247
>04_01_0245 + 3209755-3209798,3209852-3210398
Length = 196
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 114 RNVNPSNLSMFIEAYVRRSDLGICRNAD--TIKVP-VLNITGALSPHVDDTVTFN 165
R++ PSN+ + R +D G+ R AD TI+ V+ I L P T FN
Sbjct: 40 RDIKPSNILLDNNFNARLADFGLSRTADNGTIQSSMVVGIENYLDPECRKTGKFN 94
>01_03_0023 + 11731990-11732185,11732672-11733363
Length = 295
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 156 PHVDDTVTFNGRLNPNNSTWMKISDCAMVLEEQPSKISEAFRLFL 200
P+ + T GR +PN +T + I C + + +F+ +L
Sbjct: 155 PNQSNVYTAQGREDPNQNTGISIQKCKVAAASDLLAVQSSFKTYL 199
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.137 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,149,378
Number of Sequences: 37544
Number of extensions: 247254
Number of successful extensions: 592
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 573
Number of HSP's gapped (non-prelim): 24
length of query: 209
length of database: 14,793,348
effective HSP length: 79
effective length of query: 130
effective length of database: 11,827,372
effective search space: 1537558360
effective search space used: 1537558360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
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