Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000597-TA|BGIBMGA000597-PA|IPR004142|Ndr
(209 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22347| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 2e-32
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_23511| Best HMM Match : Abhydrolase_1 (HMM E-Value=2.7e-12) 33 0.23
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09) 30 1.6
SB_18289| Best HMM Match : IgG_binding_B (HMM E-Value=7) 29 3.7
SB_50960| Best HMM Match : Pkinase (HMM E-Value=0) 29 3.7
SB_20830| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_18254| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_25856| Best HMM Match : Myb_DNA-binding (HMM E-Value=1.4) 27 8.6
>SB_22347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 136 bits (328), Expect = 2e-32
Identities = 66/140 (47%), Positives = 91/140 (65%), Gaps = 7/140 (5%)
Query: 73 RSLRSRGMTQGVLDYLLWHHFGRFPEDRNHDLTQMYKNYFTRNVNPSNLSMFIEAYVRRS 132
R L ++G+T V DYLLWHHFG ++ N DL+ YK+ +NP NL++FI +Y+ R+
Sbjct: 146 RQLHNKGLTTFVEDYLLWHHFGEKTKEENLDLSSAYKDSLRSLLNPHNLALFINSYITRT 205
Query: 133 DLGICR------NADTIKVPVLNITGALSPHVDDTVTFNGRLNPNNSTWMKISDC-AMVL 185
++ I R N ++K P L +TG SPH DD V N RL+P S +MK+SDC M L
Sbjct: 206 NIDIVRPVEGGPNPRSLKCPTLLVTGTFSPHGDDVVESNSRLDPKISEYMKVSDCGGMPL 265
Query: 186 EEQPSKISEAFRLFLQGEGY 205
EEQP+K+++A LFLQG GY
Sbjct: 266 EEQPAKVAQALILFLQGNGY 285
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 36.7 bits (81), Expect = 0.014
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 38/145 (26%)
Query: 75 LRSRGMTQGVLDYLLWHHFGRFPEDRNHDL---------------------TQMYKNY-- 111
L ++G T+G +YL WHHF R ++ D+ ++ +N+
Sbjct: 862 LNAKGFTEGTANYLKWHHFERVGGEKRKDIMYTRLAHVSVIALLQKTGKPNIELMENFCD 921
Query: 112 -FTRNVNPSNLSMFIEAYVRRSDLGICRNADTIKVPVLNITGALSPHVDDTVTFNGRLNP 170
+N+NP NL+ F+ +Y++ + ++ +TG SPH + + F L+P
Sbjct: 922 EMKKNINPHNLAAFLNSYMQTT------------AYIMVVTGEHSPHKEQSEQFFRVLSP 969
Query: 171 NNSTWMKI--SDCAMVLEEQPSKIS 193
+ I DC + E+ S S
Sbjct: 970 VDRKKYSILKPDCGTSVLEEKSDFS 994
>SB_23511| Best HMM Match : Abhydrolase_1 (HMM E-Value=2.7e-12)
Length = 518
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 2 YPSMDELANQLNYVMGHFGIKTFIGFGVGAGANVLARFALIHPKK 46
Y S ELA + V+ ++ IG G GANVL ++ P++
Sbjct: 251 YGSTGELAEMVGQVLANYNCHNLIGVGFSMGANVLLKYLGEEPER 295
>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
Length = 1248
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 73 RSLRSRGMTQGVLDYLLWHHFGRFPEDRNHDLTQMYKN 110
R LR +T+ V DY+++H G++ E DL + Y++
Sbjct: 1009 RCLRPDKVTEAVQDYIVFHMEGKYIEPPTLDLAKCYED 1046
>SB_18289| Best HMM Match : IgG_binding_B (HMM E-Value=7)
Length = 143
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 141 DTIKVPVLNITGALSPHVDDTVTFNGRLN-----PNNSTWMKISDCAMVLEEQPSKISEA 195
D +K+PV N A + + T G ++ PNN+ + I+DC LE S A
Sbjct: 2 DEVKIPVTNSPIASACQTNHISTLAGEVDNTAAHPNNTYKLSIADCGDPLESTCRHASLA 61
Query: 196 FRLFLQ 201
+ LQ
Sbjct: 62 LAVVLQ 67
>SB_50960| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 632
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 114 RNVNPSNLSMFIEAYVRRSDLGIC---RNADTIKVPVLNITGALSPHV 158
R++ P NL + +VR SDLG+ RN +TI+ V I G ++P V
Sbjct: 209 RDLKPENLLLDDYGHVRISDLGLAVQIRNGETIRGRVGTI-GYMAPEV 255
>SB_20830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 157 HVDDTVTFNGRLNPNNSTWMKISDCAMVLEEQ 188
H D+ V + N N S+WM+ CA EQ
Sbjct: 26 HEDEVVCYLDASNENESSWMRFIRCARYRGEQ 57
>SB_18254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 27.9 bits (59), Expect = 6.5
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
Query: 98 EDRNHDLTQMYKNYFTRNVNPSNLSMFIEAYVRRSDLGICRNADTIKVPVLNITGALSPH 157
E N +T+ N R N S ++ ++ R +N T+ N +
Sbjct: 116 EKNNSTVTKASNNRLVREKNNSTVTKASNNHLVRE-----KNNSTVTKASNNRLVRKKNN 170
Query: 158 VDDTVTFNGRL--NPNNSTWMKISDCAMVLEEQPSKISEAF 196
T FN RL NNST K S+ +V E+ S +++AF
Sbjct: 171 STVTKAFNNRLVREKNNSTVTKASNNHLVREKNNSTVTKAF 211
>SB_25856| Best HMM Match : Myb_DNA-binding (HMM E-Value=1.4)
Length = 296
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 84 VLDYLLWHHFGRFP 97
+LDYLLW FGR P
Sbjct: 1 MLDYLLWPFFGRLP 14
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.137 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,102,209
Number of Sequences: 59808
Number of extensions: 283839
Number of successful extensions: 494
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 482
Number of HSP's gapped (non-prelim): 13
length of query: 209
length of database: 16,821,457
effective HSP length: 79
effective length of query: 130
effective length of database: 12,096,625
effective search space: 1572561250
effective search space used: 1572561250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
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