Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000597-TA|BGIBMGA000597-PA|IPR004142|Ndr
(209 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132847-2|CAB63372.1| 343|Caenorhabditis elegans Hypothetical ... 215 2e-56
Z68135-1|CAA92227.1| 325|Caenorhabditis elegans Hypothetical pr... 127 5e-30
AL021571-5|CAI79270.1| 610|Caenorhabditis elegans Hypothetical ... 28 5.6
AL021571-2|CAA16514.2| 592|Caenorhabditis elegans Hypothetical ... 28 5.6
AL021571-1|CAA16512.2| 651|Caenorhabditis elegans Hypothetical ... 28 5.6
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ... 27 9.8
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein. 27 9.8
U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical pr... 27 9.8
>AL132847-2|CAB63372.1| 343|Caenorhabditis elegans Hypothetical
protein Y48G10A.3 protein.
Length = 343
Score = 215 bits (525), Expect = 2e-56
Identities = 99/208 (47%), Positives = 143/208 (68%), Gaps = 4/208 (1%)
Query: 2 YPSMDELANQLNYVMGHFGIKTFIGFGVGAGANVLARFALIHPKKVDALTLINCTSNQAG 61
YP+MD +A + V HF + FIGFGVG GANVL R+A + +V AL L+NC S ++G
Sbjct: 105 YPTMDGIAKTIESVADHFKLNQFIGFGVGVGANVLLRYAAQNQNRVIALVLVNCCSGKSG 164
Query: 62 WIEWAYQKMNTRSLRSRGMTQGVLDYLLWHHFGRFPEDRNHDLTQMYKNYFTRNVNPSNL 121
W+EW Y+K NT LR GMT+ +DYL+WHHFGR + + D+ + Y+ +F NP++L
Sbjct: 165 WVEWGYEKWNTSYLRKVGMTKFTVDYLMWHHFGRNYDRCSPDIVRQYRVFFQHLPNPNSL 224
Query: 122 SMFIEAYVRRSDLGICRNADT---IKVPVLNITGALSPHVDDTVTFNGRLNPNNSTWMKI 178
+ FIE+Y++R+ L I R+ T +KVPVL + GA S HV+DTV N +L+P ++ W+KI
Sbjct: 225 AEFIESYIQRTPLPISRDGTTGVQLKVPVLQLVGAGSAHVEDTVEVNTKLDPAHADWIKI 284
Query: 179 SD-CAMVLEEQPSKISEAFRLFLQGEGY 205
SD C +VL+++P ++E+ LFLQG GY
Sbjct: 285 SDSCGLVLDDRPDAVTESMMLFLQGLGY 312
>Z68135-1|CAA92227.1| 325|Caenorhabditis elegans Hypothetical
protein ZK1073.1 protein.
Length = 325
Score = 127 bits (307), Expect = 5e-30
Identities = 65/203 (32%), Positives = 110/203 (54%), Gaps = 5/203 (2%)
Query: 2 YPSMDELANQLNYVMGHFGIKTFIGFGVGAGANVLARFALIHPKKVDALTLINCTSNQAG 61
+P++D + + L+ V+ F +K+ I FG G GAN++ RFA+ HP ++ + L++CTS AG
Sbjct: 86 FPTLDGIGDDLSAVLDKFEVKSAIAFGEGVGANIICRFAMGHPNRIMGIVLVHCTSTTAG 145
Query: 62 WIEWAYQKMNTRSLRSRGMTQGVLDYLLWHHFGRFPEDRNHDLTQMYKNYFTRNVNPSNL 121
IE+ +K+ L + M+ G DYLL H FG + R Q Y +NP NL
Sbjct: 146 IIEYCKEKVMNMRLENSIMSDGAWDYLLAHKFGGESKSR-----QEYLEELKATLNPKNL 200
Query: 122 SMFIEAYVRRSDLGICRNADTIKVPVLNITGALSPHVDDTVTFNGRLNPNNSTWMKISDC 181
S ++ A+ +R+DL V L +TG+ + H+ T + +N +T + + +
Sbjct: 201 SKYLVAFTKRTDLSSTIGTKLETVDALLVTGSKASHLHTVYTTHKSMNKKKTTLLVVDNV 260
Query: 182 AMVLEEQPSKISEAFRLFLQGEG 204
A V++E P K++ + L +G G
Sbjct: 261 ADVMQEAPDKLARSLILLCKGCG 283
>AL021571-5|CAI79270.1| 610|Caenorhabditis elegans Hypothetical
protein T19A6.2c protein.
Length = 610
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 7 ELANQLNYVMGHFGIKTFIGFGVGAGANVLARFALIHPKK 46
EL+ ++ + H I FG GA N+L +FA +HP +
Sbjct: 286 ELSKEMPTIAFHASINN--SFGKGAVINLLRQFAKLHPDR 323
>AL021571-2|CAA16514.2| 592|Caenorhabditis elegans Hypothetical
protein T19A6.2b protein.
Length = 592
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 7 ELANQLNYVMGHFGIKTFIGFGVGAGANVLARFALIHPKK 46
EL+ ++ + H I FG GA N+L +FA +HP +
Sbjct: 227 ELSKEMPTIAFHASINN--SFGKGAVINLLRQFAKLHPDR 264
>AL021571-1|CAA16512.2| 651|Caenorhabditis elegans Hypothetical
protein T19A6.2a protein.
Length = 651
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 7 ELANQLNYVMGHFGIKTFIGFGVGAGANVLARFALIHPKK 46
EL+ ++ + H I FG GA N+L +FA +HP +
Sbjct: 286 ELSKEMPTIAFHASINN--SFGKGAVINLLRQFAKLHPDR 323
>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
protein.
Length = 1173
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 111 YFTRNVNPSNLSMFIEAYVRRSDLGIC 137
Y R+V P N+ + I +++ +D G C
Sbjct: 186 YIHRDVKPDNMLISISGHIKLADFGTC 212
>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
Length = 1173
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 111 YFTRNVNPSNLSMFIEAYVRRSDLGIC 137
Y R+V P N+ + I +++ +D G C
Sbjct: 186 YIHRDVKPDNMLISISGHIKLADFGTC 212
>U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical protein
F40F4.6 protein.
Length = 2214
Score = 27.1 bits (57), Expect = 9.8
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 120 NLSMFIEAYVRRSDLGICRNADTIKVPVLNITGALSPHVDDTV---TFNGRLNPNNSTWM 176
N +F+ SDLG +T++V + N L V T TF+G N + TW+
Sbjct: 1650 NSEIFLVTPAGPSDLG--NYVETMEV-LFNTQAHLHYVVSKTANCATFDGVNNVRDMTWL 1706
Query: 177 KISDCAMVLEEQPSKISEAFRLFL 200
+L P+ I F +L
Sbjct: 1707 GYGSSGNILFTDPANIVNLFNFYL 1730
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.137 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,261,427
Number of Sequences: 27539
Number of extensions: 214721
Number of successful extensions: 493
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 8
length of query: 209
length of database: 12,573,161
effective HSP length: 78
effective length of query: 131
effective length of database: 10,425,119
effective search space: 1365690589
effective search space used: 1365690589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
- SilkBase 1999-2023 -