GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000597-TA|BGIBMGA000597-PA|IPR004142|Ndr
         (209 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    26   0.30 
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.5  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 109 KNYFTRNVNPSNLSMFIEAYVRRSDLGICRNAD 141
           +N   R++ P NL +  + YV+  D G  +  D
Sbjct: 485 RNIIYRDLKPENLLLDSQGYVKLVDFGFAKRLD 517


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 172 NSTWMKISDCAMVLEEQP 189
           NS    +SDC+ + EE P
Sbjct: 95  NSVKQLVSDCSTISEENP 112


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 47  VDALTLINCTSNQAGWIEWAYQKMNTRSLRSRG 79
           + +L L+N + N   W ++A+   N + L   G
Sbjct: 548 IASLLLLNLSENHIEWFDYAFIPGNLKWLDIHG 580


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 118 PSNLSMFIEAYVRRSDLGICR 138
           P  LS+F + Y  +  LGIC+
Sbjct: 88  PFELSVFWQQYPWQWGLGICK 108


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,056
Number of Sequences: 429
Number of extensions: 2779
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 209
length of database: 140,377
effective HSP length: 55
effective length of query: 154
effective length of database: 116,782
effective search space: 17984428
effective search space used: 17984428
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)