Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000596-TA|BGIBMGA000596-PA|IPR004908|ATPase, V1 complex,
subunit H
         (478 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   7.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   7.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   9.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   9.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 129 NVWQPFLNLLNRQD--EFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNNND 186
           N W+P  NL+N  D  E  +    +++           +  D+  +L++LK   KT  + 
Sbjct: 273 NTWEPISNLINCSDILEEFERNRLQLLESFKRKVNFYPNNQDIEKFLNYLKRGGKTLTSI 332

Query: 187 YIQS 190
            ++S
Sbjct: 333 SVES 336


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 433 HDDPNVRYEALLAVQKLMVHNWEYLGKQLEKEQID 467
           H+D  +RY    +V      ++ YL ++LE+  +D
Sbjct: 275 HNDGRLRYWRTPSVVVSDYSDYSYLDEKLERNDLD 309


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/25 (32%), Positives = 17/25 (68%)

Query: 453 NWEYLGKQLEKEQIDKQAGTVVGAK 477
           +W Y G Q++ + + ++AG+ + AK
Sbjct: 178 SWTYNGAQVDLKHMKQEAGSNLVAK 202


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 11/48 (22%), Positives = 26/48 (54%)

Query: 20  VFVREDMIAATSVLQIRASEIRQTRINWQSYLQSQMITQRDHDFIVNL 67
           V +  D   + ++ Q++ ++I +TR       + +++ + D DF+V L
Sbjct: 384 VQIAGDSSRSFALKQMKKAQIVETRQQQHIMSEKRIMGEADCDFVVKL 431


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,830
Number of Sequences: 429
Number of extensions: 5048
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 478
length of database: 140,377
effective HSP length: 60
effective length of query: 418
effective length of database: 114,637
effective search space: 47918266
effective search space used: 47918266
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)