GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000596-TA|BGIBMGA000596-PA|IPR004908|ATPase, V1 complex,
subunit H
         (478 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   3.6  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   4.7  
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    23   6.2  
AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esteras...    23   6.2  
AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.      23   6.2  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      23   6.2  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 435 DPNVRYEALLAVQKLMVHNWEYL 457
           DP   Y  LL   ++  H W+Y+
Sbjct: 69  DPKAMYTVLLEFVQIDPHRWKYV 91


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 135 LNLLNRQDEF-VQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNNNDY 187
           LN LN+  E     +T   +  L  W   L +K+D  +Y+S+  D  K N+  Y
Sbjct: 391 LNPLNKGTEADSSFVTLPQLHSLDEWDDTLKEKADFQYYVSY--DFYKMNHPVY 442


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 348 EVKSGRLEWSPVHKSAKFWRENAAR 372
           E+K+G LE   V +  KFW  N AR
Sbjct: 438 ELKAGSLEEISVKRFVKFW-TNFAR 461


>AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esterase
           protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 348 EVKSGRLEWSPVHKSAKFWRENAAR 372
           E+K+G LE   V +  KFW  N AR
Sbjct: 440 ELKAGSLEEISVKRFVKFW-TNFAR 463


>AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.
          Length = 515

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 348 EVKSGRLEWSPVHKSAKFWRENAAR 372
           E+K+G LE   V +  KFW  N AR
Sbjct: 438 ELKTGSLEEISVKRFVKFW-TNFAR 461


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 348 EVKSGRLEWSPVHKSAKFWRENAAR 372
           E+K+G LE   V +  KFW  N AR
Sbjct: 440 ELKTGSLEEISVKRFVKFW-TNFAR 463


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,060
Number of Sequences: 317
Number of extensions: 4394
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 478
length of database: 114,650
effective HSP length: 59
effective length of query: 419
effective length of database: 95,947
effective search space: 40201793
effective search space used: 40201793
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)