Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000596-TA|BGIBMGA000596-PA|IPR004908|ATPase, V1 complex,
subunit H
(478 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p... 219 9e-58
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 37 0.007
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 33 0.088
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 29 1.1
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 28 3.3
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 4.4
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 27 4.4
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb... 27 4.4
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 5.8
SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 5.8
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 27 7.6
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe... 27 7.6
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 27 7.6
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 27 7.6
>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 219 bits (534), Expect = 9e-58
Identities = 134/419 (31%), Positives = 224/419 (53%), Gaps = 14/419 (3%)
Query: 38 SEIRQTRINWQSYLQSQMITQRDHDFIVNLDQR---GQKDLPDKNPDACAEVFLNLLTHI 94
+ +R I WQ Y +S + + + I NL + +++ A + +FL LL+
Sbjct: 29 NNVRCVAIPWQGYQRSGSLEENELQEIENLTGKPLSAYVKTAEEDTTAYSNLFLKLLSMK 88
Query: 95 SKDHTIQYILVLIDDILSEDKSRVKIFRETKFSGNVWQPFLNLLNRQDEFVQHMTARIIA 154
+ + LV + D L + F + + + + +N D+ + + AR+ A
Sbjct: 89 DTPDVVNFALVKLADTLLNSNKFLSAFGPAFY--DFLEKDESYINYLDDDSKLLFARVFA 146
Query: 155 KLACWHPQLMDKSDLHFYLSWLKDQLKTNNNDYIQSVARCLQMMLRIDEYRFAFLSVDGI 214
+ P + K+ +L +L +++ N +CL +L + +R+A + +
Sbjct: 147 LCSSSSPCSVAKA-FTLFLEYLGKLMQSLNPLTRLFAVQCLNGVLTLKAHRYALWAENTC 205
Query: 215 S-TLLSILASRV-NFQVQYQLVFCLWVLTFNPLLAEKMNK-FNVIPILADILSDSVKEKV 271
S L +L + + + Q+QY +FC W LTF +A+ +NK F++I +L I+ K KV
Sbjct: 206 SFRLAELLRNSIGDTQLQYYSLFCFWQLTFESHIAQDINKRFDLIKLLVQIIRSDTKTKV 265
Query: 272 TRIVLAVFRNLIEKPEDQQVAKEHCIAMVQCKVLKQLSILEQKRSDDEDIMNDVEYLNER 331
R+VLA+ NLI+K K+ M+ V K + +L++++ DEDI N ++++
Sbjct: 266 YRLVLAILVNLIDK-----APKDTISTMLLEHVDKAVQLLQKRKWADEDITNYLDFITST 320
Query: 332 LQASVQDLSSFDQYATEVKSGRLEWSPVHKSAKFWRENAARLNERGQELLRTLVHLLEKS 391
L S + LS+FD Y +E+ +G L WSP H+S FW +NA RLNE LL+ L H+++ +
Sbjct: 321 LDESSKHLSTFDMYKSELDTGILHWSPSHRSEDFWHQNAKRLNEDNYALLKKLFHIVQYN 380
Query: 392 RDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLM 450
D LAVAC+D+G Y+R YP G+ +I + G KQR+M L+SH DP VR+EAL VQ LM
Sbjct: 381 EDNTSLAVACHDLGAYIRSYPEGRSLIIKYGAKQRIMDLMSHPDPEVRFEALSTVQLLM 439
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 36.7 bits (81), Expect = 0.007
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 16/144 (11%)
Query: 245 LLAEKMNKFNVIPILADILSDSVKEKVTRIVLAVFRNLIEKPEDQQVAKEHCIAMVQCKV 304
LL EK+NK N AD ++S K + L+ + D KE+ I+ ++ K+
Sbjct: 761 LLTEKLNKKN-----AD--TESFKNTIREAELSK-----KALNDNLGNKENIISDLKNKL 808
Query: 305 LKQLSILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFD----QYATEVKSGRLEWSPVH 360
++ + L++ +S N +E LNER+ A+ +LSS + A E+K + + S +
Sbjct: 809 SEESTRLQELQSQLNQDKNQIETLNERISAAADELSSMESINKNQANELKLAKQKCSNLQ 868
Query: 361 KSAKFWRENAARLNERGQELLRTL 384
+ F + A E+ L + L
Sbjct: 869 EKINFGNKLAKEHTEKISSLEKDL 892
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 33.1 bits (72), Expect = 0.088
Identities = 40/189 (21%), Positives = 80/189 (42%), Gaps = 8/189 (4%)
Query: 122 RETKFSGNVWQPFLNLLNRQDEFVQHMTARIIAKLA--CWHPQLMDKSDLHFYLSWLKDQ 179
R+ S ++LL D VQ+ I+ +A H + + +S+ S + Q
Sbjct: 201 RQQLVSAGTIPVLVSLLPSSDTDVQYYCTTSISNIAVDAVHRKRLAQSEPKLVRSLI--Q 258
Query: 180 LKTNNNDYIQSVARCLQMMLRIDE-YRFAFLSVDGISTLLSILASRVNFQVQYQLVFCLW 238
L ++ +Q A L DE Y+ + + + +LL +L S + V C+
Sbjct: 259 LMDTSSPKVQCQAALALRNLASDERYQIEIVQSNALPSLLRLLRSSY-LPLILASVACIR 317
Query: 239 VLTFNPLLAEKMNKFNVIPILADILSDSVKEKVTRIVLAVFRNLIEKPE--DQQVAKEHC 296
++ +PL + + L D+LS + E++ ++ RNL E + + + +
Sbjct: 318 NISIHPLNESPIIDAGFLRPLVDLLSCTENEEIQCHAVSTLRNLAASSERNKRAIIEANA 377
Query: 297 IAMVQCKVL 305
I ++C +L
Sbjct: 378 IQKLRCLIL 386
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 301 QCKVLKQLSILEQKRSDDEDIMNDVEYLNERLQASVQ-DLSSFDQYATEVKSGRLEWSPV 359
Q + KQ S+LE + S ++ ++D ER+ ++ D S D Y ++ E +
Sbjct: 812 QLEFTKQKSLLENRISFEKQRVSDTRLRLERMHKFIEKDQESIDNYEQNREALESEVATA 871
Query: 360 HKSAKFWRENAARLNERGQELL 381
+ +E+ A N + +++L
Sbjct: 872 EAELELLKEDFASENSKTEKIL 893
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 4 HVKRRENQEEK-YNPTKVFVREDMIAATSVLQIRASEIRQTRINWQSYLQSQ 54
H+++ EN K + PT++ + +I A + Q R E+ +NW++ Q
Sbjct: 585 HIQKLENGPLKTFGPTQIKDKARLIKARFMKQNRLQELYSKSLNWKNVTVGQ 636
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 27.5 bits (58), Expect = 4.4
Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 7/144 (4%)
Query: 120 IFRETKFSGNVWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMDK-SDLHFYLSWLKD 178
I+R + S + + N+ N D F+Q + ++ L +P++ DK SDL + D
Sbjct: 248 IYRIRQLSTSTYSSEHNIGNISDPFLQVKILQFLSILGQNNPKIYDKMSDLLAQVCTNTD 307
Query: 179 QLKTNNNDYIQSVARCLQMMLRIDEYRFAFLSVDGISTLLSILASRVNFQVQYQLVFCLW 238
+ N + R + +D + L V G++ L L +R N +Y + L
Sbjct: 308 SSRNAGNAILYQAVRTI-----LDLNSDSSLRVLGVNILAKFLGNRDN-NTRYVALNMLK 361
Query: 239 VLTFNPLLAEKMNKFNVIPILADI 262
++ + A + ++ ++ L D+
Sbjct: 362 LVVNSEENAVQRHRSTILACLNDV 385
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 27.5 bits (58), Expect = 4.4
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 281 NLIEKPEDQQVAKEHCIAMVQCKVLKQLSILEQKRSDDEDIMNDV-EYLNERLQASVQDL 339
N +EK +D+ KE C V+ ++ KQ+++L +KR +E++ ++ +N+ + S
Sbjct: 466 NFVEK-DDRDAIKE-C---VETQLNKQINLLVKKRVTEENLEQEISSIINDLPKISTTKR 520
Query: 340 SSFDQYATEVKSGRL---EWSPVHK 361
+++ EV + E +PV K
Sbjct: 521 KDYEELPEEVSETSINIAEHTPVLK 545
>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 240
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 381 LRTLVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSH 433
LR +HLL+ S+ ++ A + + P + EQ+ G Q++ + H
Sbjct: 118 LRLFIHLLQPSQPSMLQVAAMKTLVCIMADRPLAIRLFEQINGLQQICVVFKH 170
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 27.1 bits (57), Expect = 5.8
Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Query: 172 YLSWLKDQLKTNNNDYIQSVA-RCLQ---MMLRIDEYRFAFLSVDGISTLLSILASRVNF 227
Y +WLK ++ N I +A R LQ + + ID + F ++ LS +
Sbjct: 80 YPTWLKFRVPMLKNLVIDHIASRDLQKRVLNILIDLWHFNPSEIEKSLIHLSTTSKSAET 139
Query: 228 QVQYQLVFCLWVLTFNPLLAEKMNKFN-VIPILADILSDSVKEKVTRIVLAVFRNLIEKP 286
++Q F +VL N L+ + + I + + SV+E+ ++L +++NL
Sbjct: 140 RIQ---CFKWFVLAHNAHLSFDVKSLRPALYINLENANPSVREEAKEVLLLIYKNLSTSA 196
Query: 287 EDQQVAKEHCIAMVQCKVLKQL 308
+ Q + + ++ ++L+ L
Sbjct: 197 KMQFITDVETTSGLRREILQSL 218
>SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 100
Score = 27.1 bits (57), Expect = 5.8
Identities = 16/94 (17%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 244 PLLAEKMNKFNVIPILADILSDSVKEKVTRIVLAVFRNLIEKPEDQQVAKEHCIAMVQCK 303
PL + N+I ++ L+ + K +++ +F L++ ++ K+ +VQ +
Sbjct: 8 PLYFRIWSSLNIICLMVTFLNVQLS-KTPIVLMPLFIALLKNNRKRETKKQTISVLVQKR 66
Query: 304 VLKQLSILEQKRSDDEDIMNDVEYLNERLQASVQ 337
K +L+ + + + +YL ++ +Q
Sbjct: 67 EEKTKLVLDDANNHNHAFLYHCQYLGQKKHVVIQ 100
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 7.6
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 176 LKDQLKTNNNDYIQSVARCLQMMLRIDEYRFAFLSVDGISTLLSILASRVNFQVQYQLVF 235
L+D + + + +++V CL +++ + + FL +GI L IL + + +Y +
Sbjct: 301 LRDPTQGSEEEMMENVFDCLCSLVQETKGKSLFLKEEGIE--LCILNMKHKGKSRYSTIK 358
Query: 236 CLWVLTFNPL 245
L L F PL
Sbjct: 359 VLDYLLFGPL 368
>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 548
Score = 26.6 bits (56), Expect = 7.6
Identities = 16/66 (24%), Positives = 35/66 (53%)
Query: 123 ETKFSGNVWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKT 182
E++ S + + +LL+ QD+ + ++ ++AKL HP L+ K + +L L +
Sbjct: 58 ESRGSMELLENCFSLLHAQDDTSKFVSLTMLAKLLNDHPNLIFKCWERMDMKFLDRLLLS 117
Query: 183 NNNDYI 188
+ +Y+
Sbjct: 118 THYEYV 123
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 7.6
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 297 IAMVQCKVLKQLSILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFDQYATEVKS 351
I +Q + L +LEQ++++ D VE L ++ VQ+++S + KS
Sbjct: 70 IKFLQNEKLNNEKLLEQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKS 124
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 26.6 bits (56), Expect = 7.6
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 385 VHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVR--YEA 442
++L + D +L AC + Y P ++++ GGK + LL N R +
Sbjct: 65 IYLSTPAFDKTILTSACITVRSYYPSQPPIVQLLDEKGGKHKYTSLLLQLWKNERSVFNI 124
Query: 443 LLAVQKLMVHNWE 455
VQ L+ ++E
Sbjct: 125 YRLVQALIKQDFE 137
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.135 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,523
Number of Sequences: 5004
Number of extensions: 89590
Number of successful extensions: 321
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 17
length of query: 478
length of database: 2,362,478
effective HSP length: 75
effective length of query: 403
effective length of database: 1,987,178
effective search space: 800832734
effective search space used: 800832734
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
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