Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000596-TA|BGIBMGA000596-PA|IPR004908|ATPase, V1 complex,
subunit H
(478 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0823 + 21765960-21766064,21766166-21766327,21766616-217667... 177 2e-44
07_03_0822 + 21762662-21762767,21763295-21763347,21764639-217647... 63 5e-10
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 33 0.50
05_01_0139 + 929343-930188 32 1.2
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230... 31 2.0
08_01_0317 - 2807275-2807487,2807573-2807737,2807818-2807987,280... 31 2.7
01_04_0096 - 15982944-15984066,15984296-15984949,15985037-15985305 30 3.5
01_01_0907 + 7128397-7128497,7129944-7130022,7130470-7130568,713... 30 3.5
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53... 30 4.7
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45... 30 4.7
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 30 4.7
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 30 4.7
09_04_0097 - 14573499-14574110,14574977-14575017,14575424-145756... 29 6.1
08_02_1125 + 24488073-24488244,24488358-24488398,24488621-244888... 29 6.1
02_05_0372 + 28370589-28371857 29 6.1
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 29 8.1
12_01_0025 + 203476-203655,205006-205233,205317-206000 29 8.1
>07_03_0823 +
21765960-21766064,21766166-21766327,21766616-21766741,
21766831-21766956,21767519-21767698,21768204-21768452
Length = 315
Score = 177 bits (431), Expect = 2e-44
Identities = 90/284 (31%), Positives = 160/284 (56%), Gaps = 12/284 (4%)
Query: 173 LSWLKDQLK--TNNNDYIQSVARCLQMMLRIDEYRFAFLSVDGISTLLSILA---SRVNF 227
+ WL QL+ T+ N + + CL +LR R F+ DG+ L+ +++ ++ +
Sbjct: 29 VDWLCSQLRNPTHPNCSVPTAMHCLATLLREQYVRALFVQADGVKLLIPLISPASTQQSI 88
Query: 228 QVQYQLVFCLWVLTFNPLLAEKMNKFNVIPILADILSDSVKEKVTRIVLAVFRNLIEKPE 287
Q+ Y+ C+W+L+F + ++ V+P L +++ S KEKV R+V+ RNL+ K
Sbjct: 89 QLLYETCLCIWLLSFYDAAVDYLSTTRVMPRLVEVVKGSTKEKVVRVVIMSIRNLLAKGA 148
Query: 288 DQQVAKEHCIAMVQCKVLKQLSILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFDQYAT 347
M+ + + L+ + DED+++ + L L+ +++ LSSF++Y
Sbjct: 149 -------FAAQMIDLGLPHIVQNLKAQAWTDEDLLDALNQLEIGLKDNLKKLSSFEKYKQ 201
Query: 348 EVKSGRLEWSPVHKSAKFWRENAARLNERGQELLRTLVHLLEKSRDPVVLAVACYDIGEY 407
+V G L+WSP+HK FWREN E ++LR L+ +++ S D LAVACYD+ ++
Sbjct: 202 QVLLGHLDWSPMHKDPSFWRENINNFEENDFQILRVLMTIIDTSADTTALAVACYDLSQF 261
Query: 408 VRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLMV 451
++++P G+ ++ L K RVM L++H++ VR ALL VQ+L +
Sbjct: 262 LQYHPSGRIVVADLKAKDRVMKLMNHENAEVRKNALLCVQRLFL 305
>07_03_0822 +
21762662-21762767,21763295-21763347,21764639-21764764,
21764960-21765062,21765146-21765222
Length = 154
Score = 62.9 bits (146), Expect = 5e-10
Identities = 30/107 (28%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 34 QIRASEIRQTRINWQSYLQSQMITQRDHDFIVNLDQRGQKD---LPDKNPDACAEVFLNL 90
++ ++ + I W+SY+ +++I+ + D + + L D++ + VFLN+
Sbjct: 48 ELTTEQVLKRDIPWESYMANKLISGTCLQLLRRYDHKPESQRGPLLDEDGPSYVRVFLNI 107
Query: 91 LTHISKDHTIQYILVLIDDILSEDKSRVKIFRETKFSG-NVWQPFLN 136
L +ISK+ T++Y+L LID++L+ + R +F + SG +++ PFL+
Sbjct: 108 LRNISKEDTVEYVLALIDEMLAVNPKRAALFYDNSLSGEDIYDPFLS 154
>11_01_0471 -
3648871-3649078,3649841-3649926,3650111-3650155,
3650306-3650815,3651700-3653757
Length = 968
Score = 33.1 bits (72), Expect = 0.50
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 79 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSE-DKSRVKIFRETKFSGNVWQPFL 135
N + +F+ ++ ++ S+DHTIQ +L+L +I+ + D + K+ E + Q
Sbjct: 47 NGETLPHLFITVVRYVLPSEDHTIQKLLLLYLEIVDKRDVASGKVLPEMIL---ICQNLR 103
Query: 136 NLLNRQDEFVQHMTARIIAKLACWHPQLMD 165
N L +E+++ +T R + +L P+L++
Sbjct: 104 NNLQHPNEYIRGVTLRFLCRLN--EPELLE 131
>05_01_0139 + 929343-930188
Length = 281
Score = 31.9 bits (69), Expect = 1.2
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 396 VLAVACYDIGEYVRHYPRGKHI--IEQLGGKQRVMYLL 431
++ VA Y G+ RH PRGKHI + L G M LL
Sbjct: 95 MVTVAGYTAGQRARHVPRGKHIAAVSILAGTSVTMALL 132
>01_01_1236 -
10020837-10021041,10021746-10021831,10022552-10023061,
10023914-10025965
Length = 950
Score = 31.1 bits (67), Expect = 2.0
Identities = 20/89 (22%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 79 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSEDKSRVKIFRETKFSGNVWQPFLN 136
N + +F+ ++ ++ S+DHTIQ +L+L +I+ + + + E + Q N
Sbjct: 47 NGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRGLPEMIL---ICQNLRN 103
Query: 137 LLNRQDEFVQHMTARIIAKLACWHPQLMD 165
L+ +E+++ +T R + +L+ P++++
Sbjct: 104 NLHHPNEYIRGVTLRFLCRLS--EPEVLE 130
>08_01_0317 -
2807275-2807487,2807573-2807737,2807818-2807987,
2808256-2808724,2810581-2810727,2810968-2810976,
2811054-2811890
Length = 669
Score = 30.7 bits (66), Expect = 2.7
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 164 MDKSDLHFYLSWLKDQLKTNNNDYIQSVARCLQMMLRIDEYRFAFLSV 211
+D SD+H W+ L++N + + RC +L ID Y FAF SV
Sbjct: 99 LDYSDIH---RWVHHVLRSNARE-VGIFVRCGSKLLSIDGYPFAFNSV 142
>01_04_0096 - 15982944-15984066,15984296-15984949,15985037-15985305
Length = 681
Score = 30.3 bits (65), Expect = 3.5
Identities = 43/208 (20%), Positives = 89/208 (42%), Gaps = 26/208 (12%)
Query: 90 LLTHISKDHTIQYILVLIDDILSEDKSRVKIF---RETKFSGNVWQPFLNLLNRQDEFVQ 146
++++ H Q+I+ L+ +L E K +V + KF V Q +L EF+
Sbjct: 472 VISNTGVHHVTQHIMGLMR-LLVEQKDKVHMMLNDNPDKFGQVVTQLISSL-----EFML 525
Query: 147 HMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNNN----DYIQSVARCLQMMLRID 202
M +R +A + L F L+ + L+ NN I + CLQ +++D
Sbjct: 526 DMNSRSLA---------LQGQQLVFLLNNINFVLEQANNYTDLKLILGESWCLQRHVQLD 576
Query: 203 EYRFAFLSVDGISTLLSILASRVNFQVQYQLVFCLWVLTFNPLLAEKMNKFNVIPILADI 262
++ +++ + S + +R+ + Q +F FN N + +
Sbjct: 577 QFLASYVEASWTPVMSSFIITRIPKILWPQQLFD----KFNSRFEMTYNVQKTWKVTDPV 632
Query: 263 LSDSVKEKVTRIVLAVFRNLIEKPEDQQ 290
+ ++EK+T+ V+ ++R +E D++
Sbjct: 633 IRQKLREKITQKVIPLYRMYLESYSDKK 660
>01_01_0907 +
7128397-7128497,7129944-7130022,7130470-7130568,
7130654-7130767,7130960-7131102,7131716-7131797,
7132425-7132510,7132879-7133112,7134684-7135162,
7135309-7136027
Length = 711
Score = 30.3 bits (65), Expect = 3.5
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 275 VLAVFRNLIEKPEDQQVAKEHCIAMV-QCKVLKQLSILEQKRSDDEDIMNDVEYLNERLQ 333
VLA N ++ + + +E + +V QC+ KQ +L + DE++M+ LN+ LQ
Sbjct: 192 VLAEMLNALDPGNREGLRQEVIVELVDQCRTYKQRVVLLVNATADEELMSQGLALNDDLQ 251
Query: 334 ASVQDLSSFDQYATEVKSGRLEWSPVHKSAKFWRENAARLNERGQELL 381
+ L+ D A + + R+E P A E++ + + ++ L
Sbjct: 252 ---RVLAKHDAIAAGI-AVRVEKKPKSLQALVDTEDSMNQDSKKEQAL 295
>12_01_0063 -
535364-536085,536226-536439,536989-537981,538238-538255,
538601-538860,539950-540073,540978-541310,541447-541531,
541683-541768,541843-541941,542041-542180,542717-543043,
543163-543774,543887-543971,543972-544067,544147-544500,
544536-544559,544597-544707,544811-544894,545468-545546,
546122-546279,546412-546528,546622-546780,546857-546939,
547525-547627,549184-549495
Length = 1925
Score = 29.9 bits (64), Expect = 4.7
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 393 DPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLM 450
+P++L C +G+ +P + + Q + V+ LLS P VR A+ A+ L+
Sbjct: 484 EPLLLQWLCLCLGKLWEDFPEAQLLGLQSNAPEIVICLLSEPQPEVRASAVFALGNLV 541
>11_01_0061 -
456521-457389,457534-457659,458377-459307,459564-459581,
459924-460183,461834-461918,462587-462919,463053-463137,
463289-463374,463455-463556,463656-463795,464332-464658,
464778-465389,465502-465586,465587-465682,465762-466115,
466212-466322,466426-466509,467086-467164,467742-467899,
468034-468150,468240-468398,468475-468557,469098-469200,
470784-471080
Length = 1899
Score = 29.9 bits (64), Expect = 4.7
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 393 DPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLM 450
+P++L C +G+ +P + + Q + V+ LLS P VR A+ A+ L+
Sbjct: 471 EPLLLQWLCLCLGKLWEDFPEAQLLGLQSNAPEIVICLLSEPQPEVRASAVFALGNLV 528
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 29.9 bits (64), Expect = 4.7
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 282 LIEKPEDQQVAKEH-CIAMVQCKVLKQLSILEQKRSDDEDIMNDVEYLNERLQA 334
L+EK +Q+V +E +A+V +V K L QK S ++ +E+L ++LQA
Sbjct: 1750 LVEKQYEQKVTEEREKLALVNTEVSK----LTQKLSKSAEMEKKIEHLEQKLQA 1799
>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.9 bits (64), Expect = 4.7
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 312 EQKRSDDEDIMNDVEYLNERLQASVQDLSSFDQYATEVKSGRLEWSPVHKSAKFWRENAA 371
+ K S +I+ E N+ L Q S + + E++ GR + S + S + ++N
Sbjct: 951 DTKVSSHAEILALQEQKNKALSDLQQSEISIENFRMELEQGREKISILDLSNEEMKDNNY 1010
Query: 372 RLNERGQELLRTLVH 386
RLN++ +E +RT +H
Sbjct: 1011 RLNQQLEE-IRTSLH 1024
>09_04_0097 -
14573499-14574110,14574977-14575017,14575424-14575616,
14575697-14575837,14575970-14576197,14576297-14576552,
14576866-14577069,14577157-14577245,14577346-14577416,
14577498-14577579,14577653-14577715,14578018-14578155
Length = 705
Score = 29.5 bits (63), Expect = 6.1
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 340 SSFDQYATEVKSGRLEWSPVHKSAKFWRENAA 371
S+ + Y T +++ R++ +PVH SA ++ EN +
Sbjct: 180 STREYYGTGIRATRIKTAPVHASASWYLENVS 211
>08_02_1125 +
24488073-24488244,24488358-24488398,24488621-24488889,
24489061-24489157,24489407-24489753,24489816-24490173,
24490319-24490894,24491374-24491649
Length = 711
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 47 WQSYLQSQMITQRDHDFIVNLDQRGQKDLPDKNPDACAEVFLNLLTHI 94
W + S ++ Q + F++N + Q+D D NP +L++L H+
Sbjct: 471 WLNSSYSPVLKQLESQFMINYYFKTQQDKRDNNPKFQNPKYLSILNHL 518
>02_05_0372 + 28370589-28371857
Length = 422
Score = 29.5 bits (63), Expect = 6.1
Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 212 DGISTLLSILASRVNFQVQYQLVFCLWVLTFNPLLAE-KMNKFNVIPILADILSDSVKEK 270
D I +LL +L+ + ++ + + L + A K + + +L ++L+D+ +
Sbjct: 242 DVIKSLLELLSDEASTRLSSRALDVLLDVVERARGARAKAVEVGAVHVLVELLADADDRR 301
Query: 271 VTRIVLAVFRNLIEKPEDQQVAKEHCIAM 299
VT VL + + L + PE + EH +++
Sbjct: 302 VTERVLLLLKRLCKCPEGRLAFAEHDLSV 330
>12_02_1035 - 25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 29.1 bits (62), Expect = 8.1
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 308 LSILEQKRSDDEDIMNDVEYLNERL---QASVQDLSSFDQYATEVKSGRLEWSPVHKSAK 364
++I ++K D + E L E+L Q+ VQ L S +Q +VKS E + + + +
Sbjct: 1016 VNIEQRKEIDHAGLEKSNELLREKLHKLQSEVQALRSKEQPVIDVKSCDAEITKLLTNMQ 1075
Query: 365 FWRENAARLNERGQELL 381
NAA E+ EL+
Sbjct: 1076 MATANAALFKEKVLELI 1092
>12_01_0025 + 203476-203655,205006-205233,205317-206000
Length = 363
Score = 29.1 bits (62), Expect = 8.1
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 371 ARLNERGQELLRTLVHLLEKSRDPVVLA 398
A + ERG EL+R V L+ SR+ V+LA
Sbjct: 52 AAMEERGDELIRPCVTRLDASRNQVLLA 79
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.135 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,644,489
Number of Sequences: 37544
Number of extensions: 493112
Number of successful extensions: 1240
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1230
Number of HSP's gapped (non-prelim): 17
length of query: 478
length of database: 14,793,348
effective HSP length: 85
effective length of query: 393
effective length of database: 11,602,108
effective search space: 4559628444
effective search space used: 4559628444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)
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