Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000596-TA|BGIBMGA000596-PA|IPR004908|ATPase, V1 complex,
subunit H
(478 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.) 364 e-100
SB_30012| Best HMM Match : Retrotrans_gag (HMM E-Value=1.1) 33 0.38
SB_56534| Best HMM Match : RVT_1 (HMM E-Value=5.5e-28) 33 0.67
SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17) 33 0.67
SB_59611| Best HMM Match : zf-CCHC (HMM E-Value=7.7e-05) 32 1.2
SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.2
SB_44702| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.03) 32 1.2
SB_3041| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.2
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_19811| Best HMM Match : RVT_1 (HMM E-Value=3.5e-32) 31 1.5
SB_33095| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.0
SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32) 31 2.0
SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052) 31 2.0
SB_41052| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.7
SB_35649| Best HMM Match : M (HMM E-Value=6e-09) 31 2.7
SB_7923| Best HMM Match : Remorin_C (HMM E-Value=1.4) 31 2.7
SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.7
SB_59196| Best HMM Match : DUF593 (HMM E-Value=1.7) 30 3.6
SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30) 30 3.6
SB_46910| Best HMM Match : DUF963 (HMM E-Value=3.3) 30 3.6
SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094) 30 3.6
SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.7
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 30 4.7
SB_14677| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25) 29 6.2
SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11) 29 8.2
SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.2
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15) 29 8.2
>SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 364 bits (895), Expect = e-100
Identities = 183/336 (54%), Positives = 246/336 (73%), Gaps = 27/336 (8%)
Query: 152 IIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNNNDYIQSVARCLQMMLRIDEYRFAFLSV 211
I+AKLACW + +SDL+F+LSWLK+QL + +Y+ S+A LQ+MLR++ Y+ AF +
Sbjct: 123 IVAKLACWGNVRLPESDLNFFLSWLKNQLTSPTCEYLHSIALSLQLMLRVESYKEAFFKL 182
Query: 212 DGISTLLS-ILASRVNFQVQYQLVFCLWVLTFNPLLAEKMNKFN-VIPILADILSDSVKE 269
+GI+++++ +L +++ FQ+QYQL+F LW+L+F+P +AE+M N VIP+LADIL DS KE
Sbjct: 183 EGINSIVATLLRNKIGFQLQYQLIFTLWLLSFDPRIAERMVGNNAVIPVLADILRDSDKE 242
Query: 270 KVTRIVLAVFRNLIEKPEDQQVAKEHCIAMVQCKVLKQLSILEQKRSDDEDIMNDVEYLN 329
KVTRI+ A RNL++KPE+++ +E ++M+Q K+L LSIL K DEDI D+EY+
Sbjct: 243 KVTRIITATLRNLLDKPEEKK--RESAVSMIQSKLLPVLSILNGKTWADEDIKADIEYVY 300
Query: 330 ERLQASVQDLSSFDQYATEVKSGRLEWSPVHKSAKFWRENAARLNERGQELLRTLV---- 385
E+L VQDLS+FD+YA EV+SGRLEWSPVHKS KFWRENA RLNE ELL+ LV
Sbjct: 301 EKLNEVVQDLSNFDEYAAEVRSGRLEWSPVHKSEKFWRENAHRLNENKYELLKYLVLHKL 360
Query: 386 -------------------HLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQR 426
LLE S DP++LAVA +D GEYVRHYPRGK ++E LG K +
Sbjct: 361 CSSKEFLTVLIPKPSRVLNKLLESSEDPLILAVAAHDTGEYVRHYPRGKTVLESLGCKGK 420
Query: 427 VMYLLSHDDPNVRYEALLAVQKLMVHNWEYLGKQLE 462
VM +++H+DP+VR EALLAVQKLMVHNWEYLGK L+
Sbjct: 421 VMQMMTHNDPSVRKEALLAVQKLMVHNWEYLGKALK 456
Score = 68.5 bits (160), Expect = 1e-11
Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 5/90 (5%)
Query: 27 IAATSVLQIRASEIRQTRINWQSYLQSQMITQRDHDFIVNLD----QRGQKDLPDKNPDA 82
+ A S L A E+R+ +NWQSY+ +MI+Q D+ I + D K + D+ D
Sbjct: 31 VIAGSRLVADAVEVRKQTVNWQSYVHGKMISQEDYSMIADYDCMDPVERAKIISDRG-DQ 89
Query: 83 CAEVFLNLLTHISKDHTIQYILVLIDDILS 112
A+ L+LL +++DHTI+YILVLIDD+L+
Sbjct: 90 LAKTCLSLLVKLTRDHTIRYILVLIDDMLN 119
>SB_30012| Best HMM Match : Retrotrans_gag (HMM E-Value=1.1)
Length = 306
Score = 33.5 bits (73), Expect = 0.38
Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 293 KEHCIAMVQCKVLKQLS---------ILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFD 343
KE +AMV+ KV+ +S ++ KR+ D I D+ LN+ ++ + ++S D
Sbjct: 140 KEKLLAMVRQKVISPVSEPTDWCSGMVIAPKRNGDVRICVDLTPLNKAVKREIHPMASVD 199
Query: 344 QYATEVKSGRLEWSPVHKSAKFWR 367
+ T++K ++ ++ + ++ FW+
Sbjct: 200 ENLTKLKDSKV-FTKLDANSGFWQ 222
>SB_56534| Best HMM Match : RVT_1 (HMM E-Value=5.5e-28)
Length = 1052
Score = 32.7 bits (71), Expect = 0.67
Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Query: 285 KPEDQQVAKEHCIAMVQCKVLKQLS---------ILEQKRSDDEDIMNDVEYLNERLQAS 335
KP+ V KE +AMV+ KV+ +S ++ KR+ D I D+ LN+ ++
Sbjct: 447 KPDAVSV-KEKLLAMVRQKVISPVSEPTDWCSGMVIAPKRNGDVRICVDLTPLNKAVKRE 505
Query: 336 VQDLSSFDQYATEVKSGRLEWSPVHKSAKFWR 367
+ ++S D+ ++K ++ ++ + ++ FW+
Sbjct: 506 IHPMASVDENLAKLKDSKV-FTKLDANSGFWQ 536
>SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
Length = 765
Score = 32.7 bits (71), Expect = 0.67
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 292 AKEHCIAMVQCKVLKQLSILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFDQYATEVKS 351
A E C K + L + E +SD I D+ LNE ++ +Q + S D+ +++
Sbjct: 108 AIERCRMNEMRKENRDLVLGEINKSDSMRICVDLTQLNEGVKWEIQPMPSVDESLSKLSQ 167
Query: 352 GRLEWSPVHKSAKFWR 367
G++ +S + ++ FW+
Sbjct: 168 GKV-FSKLDANSGFWQ 182
>SB_59611| Best HMM Match : zf-CCHC (HMM E-Value=7.7e-05)
Length = 314
Score = 31.9 bits (69), Expect = 1.2
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 293 KEHCIAMVQCKVLKQLS---------ILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFD 343
KE +AMV+ KV+ +S ++ KR+ D I D+ LN+ ++ + ++S D
Sbjct: 226 KEKLLAMVRQKVISPVSEPTDWCSGMVIAPKRNGDVRICVDLTPLNKAVKREIHPMASID 285
Query: 344 QYATEVKSGRLEWSPVHKSAKFWR 367
+ ++K ++ ++ + ++ FW+
Sbjct: 286 ENLAKLKDSKV-FTKLDANSGFWQ 308
>SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 31.9 bits (69), Expect = 1.2
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 293 KEHCIAMVQCKVLKQLS---------ILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFD 343
KE +AMV+ KV+ +S ++ KR+ D I D+ LN+ ++ + ++S D
Sbjct: 440 KEKLLAMVRQKVISPVSEPTDLCSGMVIASKRNGDVRICVDLTPLNKAVKREIHPMASVD 499
Query: 344 QYATEVKSGRLEWSPVHKSAKFWR 367
+ ++K ++ ++ + ++ FW+
Sbjct: 500 ENLAKLKDSKV-FTKLDANSGFWQ 522
>SB_44702| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.03)
Length = 307
Score = 31.9 bits (69), Expect = 1.2
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 299 MVQCKVLKQLSILEQKRSDDEDIMNDVEYLNERLQASVQD-LSSFDQYATEVKSGRLEWS 357
++Q + KQ+S++ + +SD + I + E+L+ D L+S Q E+K L++
Sbjct: 121 VLQAESRKQISLISKLKSDIKSIKEQHDTEVEKLEKETSDYLASLRQLKQELKDKELKYE 180
Query: 358 PVHKSAKF-WRENAARLNERGQELLR 382
+S + ++ A + E ELL+
Sbjct: 181 KDMESLRVRCKKQACSIKELKSELLK 206
>SB_3041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 939
Score = 31.9 bits (69), Expect = 1.2
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 293 KEHCIAMVQCKVLKQLS---------ILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFD 343
KE +AMV+ KV+ +S ++ KR+ D I D+ LN+ ++ + ++S D
Sbjct: 81 KEKLLAMVRQKVISPVSEPTDWCSGMVIAPKRNGDVRICVDLTPLNKAVKREIHPMASID 140
Query: 344 QYATEVKSGRLEWSPVHKSAKFWR 367
+ ++K ++ ++ + ++ FW+
Sbjct: 141 ENLAKLKDSKV-FTKLDANSGFWQ 163
>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3038
Score = 31.5 bits (68), Expect = 1.5
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 293 KEHCIAMVQCKVLKQLS---------ILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFD 343
KE +AMV+ KV+ +S ++ KR+ D I D+ LN+ ++ + ++S D
Sbjct: 2234 KEKLLAMVRQKVISPVSEPTDWCSGMVIAPKRNGDVRICVDLTPLNKAVKREIHPMASVD 2293
Query: 344 QYATEVKSGRLEWSPVHKSAKFWR 367
+ ++K ++ ++ + ++ FW+
Sbjct: 2294 ENLAKLKDSKV-FTKLDANSGFWQ 2316
>SB_19811| Best HMM Match : RVT_1 (HMM E-Value=3.5e-32)
Length = 670
Score = 31.5 bits (68), Expect = 1.5
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 293 KEHCIAMVQCKVLKQLS---------ILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFD 343
KE +AMV+ KV+ +S ++ KR+ D I D+ LN+ ++ + ++S D
Sbjct: 300 KEKLLAMVRQKVISPVSEPTDWCSGMVIAPKRNGDVRICVDLTPLNKAVKQEIHPMASVD 359
Query: 344 QYATEVKSGRLEWSPVHKSAKFWR 367
+ ++K ++ ++ + ++ FW+
Sbjct: 360 ENLAKLKDSKV-FTKLDANSGFWQ 382
>SB_33095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 31.5 bits (68), Expect = 1.5
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 293 KEHCIAMVQCKVLKQLS---------ILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFD 343
KE +AMV+ KV+ +S ++ KR+ D I D+ LN+ ++ + ++S D
Sbjct: 2 KEKLLAMVRQKVISPVSEPTDWCSGMVIAPKRNGDVRICVDLTPLNKAVKREIHPMASVD 61
Query: 344 QYATEVKSGRLEWSPVHKSAKFWR 367
+ ++K ++ ++ + ++ FW+
Sbjct: 62 ENLAKLKDSKV-FTKLDANSGFWQ 84
>SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1407
Score = 31.1 bits (67), Expect = 2.0
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 337 QDLSSFDQYATEVKSGRLEWSPVHKSAKFWRENAARLNERGQELLRTLVHLLEKSRDPVV 396
++L+S TE G W + K+ ++ + +L + + L + + P
Sbjct: 821 RELASLLTITTERDMGDEVWEEIAKALRYTQAEITKLAASDEPMTELLANYKRRGGQPHE 880
Query: 397 LAVACYDIGEYVRHYPRGK 415
A Y IG+Y R+ P G+
Sbjct: 881 FISAMYSIGQY-RNRPHGQ 898
>SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)
Length = 991
Score = 31.1 bits (67), Expect = 2.0
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 293 KEHCIAMVQCKVLKQLS---------ILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFD 343
KE +AMV+ KV+ +S ++ KR+ D I D+ LN+ ++ + ++S D
Sbjct: 326 KEKLLAMVRQKVISPVSEPTDWCSGMVIAPKRNGDVRICVDLAPLNKAVKREIHPMASAD 385
Query: 344 QYATEVKSGRLEWSPVHKSAKFWR 367
+ ++K ++ ++ + ++ FW+
Sbjct: 386 ENLAKLKDSKV-FTKLDANSGFWQ 408
>SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052)
Length = 649
Score = 31.1 bits (67), Expect = 2.0
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 268 KEKVTRIVLAVFRNLIEKPEDQQVAKEHCIAMVQCKVLKQLSILEQKRSDDEDIMNDVEY 327
K+K+ + L +N +E + K+ + Q + K L+++R+ +E M D +
Sbjct: 19 KDKLEK-ELKTSKNDLESKTAELKTKQSQLQRNQEDIAKLEQQLKEQRTLNEKAMKDTDL 77
Query: 328 LNERLQASVQD----LSSFDQYATEVKSGRLEWSPVHKSAKFWRENAARLNERGQELLRT 383
LN RL QD L + DQ A+E E +++ RL + + + R
Sbjct: 78 LNARLTKVQQDFEQQLMNCDQLASENTQKAAELKAKEDEINTLKQDTVRLTKMREAIQRR 137
Query: 384 L 384
L
Sbjct: 138 L 138
>SB_41052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 30.7 bits (66), Expect = 2.7
Identities = 20/84 (23%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 293 KEHCIAMVQCKVLKQLS---------ILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFD 343
KE +AMV+ KV+ +S ++ KR+ D I D+ LN+ ++ + ++S D
Sbjct: 465 KEKLLAMVRQKVISPVSEPTDWCSDMVIAPKRNGDVRICVDLTPLNKAVKREIHPMASVD 524
Query: 344 QYATEVKSGRLEWSPVHKSAKFWR 367
+ ++K + ++ + ++ FW+
Sbjct: 525 ENLAKLKDSEV-FTKLDANSGFWQ 547
>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
Length = 1279
Score = 30.7 bits (66), Expect = 2.7
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 300 VQCKVLKQLS-ILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFDQYA----TEVKSGRL 354
V+ K L ++ L K D E+ +E LNE+LQ QDL + ++++ +E++S R
Sbjct: 827 VKSKELDEIKEALSIKDKDIENYNLVIESLNEKLQQGTQDLVASNEHSKSQQSEIESLR- 885
Query: 355 EWSPVHKSAKFWREN-AARLNERGQ-ELLRTL 384
S + KF+ EN +A +GQ E+L +L
Sbjct: 886 --SQIESLNKFYNENQSAEEKLQGQREVLDSL 915
>SB_7923| Best HMM Match : Remorin_C (HMM E-Value=1.4)
Length = 201
Score = 30.7 bits (66), Expect = 2.7
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 298 AMVQCKVLKQLSILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFDQYATEVKSGRLEWS 357
A+ + + Q LE +R+D + +++ V+ ERL+ ++S + T+ ++ EW
Sbjct: 25 ALEEISIEDQQQQLETRRADLKAVVHVVKKARERLKELESEVSHVAKKKTKAQTKLEEWK 84
Query: 358 PVHKSAKFWRENAARLNERGQELLRTLVHLLEKSRD 393
+ +S R A + + R E + LL K +D
Sbjct: 85 VIERS----RLEAIQEDARSLEKIANKRSLLVKKKD 116
>SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1963
Score = 30.7 bits (66), Expect = 2.7
Identities = 20/84 (23%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 293 KEHCIAMVQCKVLKQLS---------ILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFD 343
KE +AMV+ KV+ +S ++ KR+ D I D+ LN+ ++ + ++S D
Sbjct: 1105 KEKLLAMVRQKVISPVSEPTDWCSGMVIAPKRNGDVRICVDLTPLNKAVKREIHPMASVD 1164
Query: 344 QYATEVKSGRLEWSPVHKSAKFWR 367
+ ++K + ++ + ++ FW+
Sbjct: 1165 ENLAKLKDSK-AFTKLDANSGFWQ 1187
>SB_59196| Best HMM Match : DUF593 (HMM E-Value=1.7)
Length = 1376
Score = 30.3 bits (65), Expect = 3.6
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 284 EKPEDQQVAKEHCIAMVQCKVLKQLSILEQKRSDDEDIMNDVEYLNER--LQASVQDLSS 341
E P +++ +E + + ++K+ + EQ DD + E L E L A+V + S+
Sbjct: 849 EDPVTEEITEESVLQTEESLIIKESVVSEQTLEDDTVVEISTEVLQEETLLSAAVIEEST 908
Query: 342 FDQYATEVK 350
F+ T+++
Sbjct: 909 FEVQETQLE 917
>SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30)
Length = 1246
Score = 30.3 bits (65), Expect = 3.6
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 293 KEHCIAMVQCKVLKQLS---------ILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFD 343
KE +AMV+ KV+ +S ++ KR+ D I D+ LN+ ++ + ++S D
Sbjct: 478 KEKLLAMVRQKVISPVSEPTDWCSGMVIAPKRNGDVRICVDLTPLNKAVKREIHPMASVD 537
Query: 344 QYATEVKSGRLEWSPVHKSAKFWR 367
+ ++K ++ ++ + ++ FW+
Sbjct: 538 ENLAKLKECKV-FTKLDANSGFWQ 560
>SB_46910| Best HMM Match : DUF963 (HMM E-Value=3.3)
Length = 984
Score = 30.3 bits (65), Expect = 3.6
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 284 EKPEDQQVAKEHCIAMVQCKVLKQLSILEQKRSDDEDIMNDVEYLNER--LQASVQDLSS 341
E P +++ +E + + ++K+ + EQ DD + E L E L A+V + S+
Sbjct: 849 EDPVTEEITEESVLQTEESLIIKESVVSEQTLEDDTVVEISTEVLQEETLLSAAVIEEST 908
Query: 342 FDQYATEVK 350
F+ T+++
Sbjct: 909 FEVQETQLE 917
>SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094)
Length = 289
Score = 30.3 bits (65), Expect = 3.6
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 3/106 (2%)
Query: 68 DQRGQKDLPDKNPDACAEVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETKFS 127
D R Q + + L I+K H I Y L D I + + ++ +
Sbjct: 101 DIRNQSQYSHRQGQLITTRMMRLFDLIAKKHNISYWLTSADYIKFFEVAAKELPSDMFLQ 160
Query: 128 GNVWQPFLNLLNRQ-DEFVQHMTARIIAKLACWHPQLMDKSDLHFY 172
++ P+L N+Q + H I + W+P+L DK + Y
Sbjct: 161 NSISDPYLRPDNKQYAASITHPKVGIYQR--SWNPRLRDKKSCYKY 204
>SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 784
Score = 29.9 bits (64), Expect = 4.7
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 404 IGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEAL 443
+ YV P G ++ +GG+Q ++ ++H + V Y+ L
Sbjct: 239 VATYVTFSPDGSEVLTNMGGEQVYLFDINHPNKPVSYQRL 278
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 29.9 bits (64), Expect = 4.7
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 303 KVLKQLSILEQKRSDDEDIMNDVEYLNERL----QASVQDL--SSFDQYATEV-----KS 351
+V K L +++Q ++ ED+ N V+ L ERL A Q L S+ +Y + KS
Sbjct: 2119 EVKKLLRLVDQVSTEKEDLANRVKELQERLGVETDAKTQALLESALGEYQDHIDMLERKS 2178
Query: 352 GRLEWSPVHKSAKFWRENAARLNERGQELLRTL 384
LE KS K E +R+NE +EL + L
Sbjct: 2179 KELEEELNTKSEK-EVEMLSRVNELQEELAKAL 2210
>SB_14677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 29.5 bits (63), Expect = 6.2
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 27 IAATSVLQIRASEIRQTRINWQS--YLQSQMITQRDHDFIVNLDQRGQKDLPDKNPD--A 82
+ A S Q R IR + IN + +++ +++ R+ D DQ DL KN D +
Sbjct: 22 VKAVSAEQYREELIRDSFINGLNSPFIRQRLLENRELDLKTAFDQANALDLAQKNSDSYS 81
Query: 83 CAEVFLNL 90
C E L
Sbjct: 82 CLEQIFTL 89
>SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)
Length = 1962
Score = 29.5 bits (63), Expect = 6.2
Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 96 KDHTIQYILVLIDDILSEDKSRVKIFRE--TKFSGNVWQPFLNL-----LNRQDEFVQHM 148
KD T + I+ + I + K+ + T+F ++Q FL + + E +
Sbjct: 674 KDKTGKRIVEAFESIFEGGRQPEKLQTDDGTEFKNRIFQAFLKSQGIQHFSTRSELKASV 733
Query: 149 TARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNNNDYIQSVARCLQMMLRIDE 203
R L W + + H Y+ L + NN+ Y +S+ R ++ D+
Sbjct: 734 VERFNRTLKTWMWRWFTYKETHRYVDMLPQLVHNNNHSYHRSIRRAPADVVTYDD 788
>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
Length = 1491
Score = 29.1 bits (62), Expect = 8.2
Identities = 19/91 (20%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 265 DSVKEKVTRIVLAVFRNLIEKPE-----DQQVAKEHCIAMVQCKVLKQLSILEQKRSD-D 318
D+ K+ +LA F N + K E ++++ EH + + ++ ++ I+E+ ++D +
Sbjct: 232 DNPKDDSIDALLASFENRVPKDEFLRLENEKIRLEHVLRDRERQLKEKDRIIEENKADYE 291
Query: 319 EDIMNDVEYLNERLQASVQDLSSFDQYATEV 349
ED+ + E L + + S + + + Y ++
Sbjct: 292 EDLKSLKELLRKAEEKSKSKMKAINDYEIQI 322
>SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 29.1 bits (62), Expect = 8.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 429 YLLSHDDPNVRYEALLAVQKLMVHNWEYLGKQLEKEQID 467
YLL+ P+V L KL++ N E+ G Q++ E +D
Sbjct: 1227 YLLNVTIPHVGKTTRLGFVKLVIKNMEHQGPQIDVEAVD 1265
>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
Length = 1774
Score = 29.1 bits (62), Expect = 8.2
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 319 EDIMNDVEYLNERLQASVQDLSSFDQYATEVKSGRLE-WSP-VHKSAKFWRENAARLNER 376
+ + N + L+E++ L SFD Y+T+ + RL SP + + K +++ LN
Sbjct: 1285 DKVKNLRDGLDEKITCLSDVLKSFDVYSTKTEEIRLHPCSPMLDRGMKILCDSSGLLNAI 1344
Query: 377 GQELLRTLVHLLEKSR 392
+++ +T H E R
Sbjct: 1345 SEQINKTNFHYSESDR 1360
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.135 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,065,535
Number of Sequences: 59808
Number of extensions: 600121
Number of successful extensions: 1600
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1588
Number of HSP's gapped (non-prelim): 35
length of query: 478
length of database: 16,821,457
effective HSP length: 85
effective length of query: 393
effective length of database: 11,737,777
effective search space: 4612946361
effective search space used: 4612946361
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)
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