Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000596-TA|BGIBMGA000596-PA|IPR004908|ATPase, V1 complex,
subunit H
(478 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g42050.1 68416.m04311 vacuolar ATP synthase subunit H family ... 220 2e-57
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 37 0.026
At4g31480.1 68417.m04472 coatomer beta subunit, putative / beta-... 37 0.026
At1g23180.1 68414.m02896 armadillo/beta-catenin repeat family pr... 35 0.10
At5g03060.1 68418.m00254 expressed protein ; expression supporte... 33 0.31
At4g24530.1 68417.m03516 expressed protein contains Pfam PF03138... 33 0.55
At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to SP... 33 0.55
At2g24070.1 68415.m02875 expressed protein contains Pfam domain,... 31 1.3
At2g37330.1 68415.m04578 expressed protein and genefinder 31 1.7
At4g29170.1 68417.m04174 Mnd1 family protein contains Pfam PF039... 31 2.2
At5g40140.1 68418.m04871 armadillo/beta-catenin repeat family pr... 30 2.9
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 30 3.9
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 29 5.1
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 29 5.1
At5g65470.1 68418.m08233 expressed protein contains Pfam PF03138... 29 6.8
At5g60510.1 68418.m07588 undecaprenyl pyrophosphate synthetase f... 29 8.9
At4g36860.2 68417.m05227 LIM domain-containing protein low simil... 29 8.9
At2g45490.1 68415.m05658 protein kinase, putative contains prote... 29 8.9
At1g51350.1 68414.m05775 armadillo/beta-catenin repeat family pr... 29 8.9
At1g48760.2 68414.m05457 delta-adaptin, putative similar to SP|O... 29 8.9
At1g48760.1 68414.m05456 delta-adaptin, putative similar to SP|O... 29 8.9
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 29 8.9
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ... 29 8.9
>At3g42050.1 68416.m04311 vacuolar ATP synthase subunit H family
protein identical to probable vacuolar ATP synthase
subunit H (EC 3.6.3.14)(V-ATPase H subunit) (Vacuolar
proton pump H subunit) (Vacuolar proton pump subunit
SFD) SP:Q9LX65 from [Arabidopsis thaliana]; contains
Pfam PF03224: V-ATPase subunit H
Length = 441
Score = 220 bits (537), Expect = 2e-57
Identities = 121/434 (27%), Positives = 240/434 (55%), Gaps = 23/434 (5%)
Query: 34 QIRASEIRQTRINWQSYLQSQMITQRDHDFIVNLDQRGQK---DLPDKNPDACAEVFLNL 90
++ ++ + I W++Y+ +++++ + + D++ + L D++ A +F+++
Sbjct: 5 ELSIEQVLKRDIPWETYMNTKLVSAKGLQLLRRYDKKPESARAQLLDEDGPAYVHLFVSI 64
Query: 91 LTHISKDHTIQYILVLIDDILSEDKSRVKIFRETKFSG-NVWQPFLNLLNRQDEFVQHMT 149
L I K+ T++Y+L LI ++LS + +R ++F + + + ++PFL LL + + F+Q +
Sbjct: 65 LRDIFKEETVEYVLALIYEMLSANPTRARLFHDESLANEDTYEPFLRLLWKGNWFIQEKS 124
Query: 150 ARIIAKLACWHPQLMDK-------SDLHFYLSWLKDQLKTNNNDY--IQSVARCLQMMLR 200
+I+A + P+ + L + WL QLK ++ + CL +L+
Sbjct: 125 CKILAWIISARPKAGNAVIGNGIDDVLKGLVEWLCAQLKQPSHPTRGVPIAISCLSSLLK 184
Query: 201 IDEYRFAFLSVDGISTLLSILA---SRVNFQVQYQLVFCLWVLTFNPLLAEKMNKFNVIP 257
R +F+ DG+ L+ +++ ++ + Q+ Y+ C+W+L++ E + +
Sbjct: 185 EPVVRSSFVQADGVKLLVPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTMQ 244
Query: 258 ILADILSDSVKEKVTRIVLAVFRNLIEKPEDQQVAKEHCIAMVQCKVLKQLSILEQKRSD 317
L +++ S KEKV R+V+ FRNL+ P+ A+ MV + + L+ +
Sbjct: 245 RLTEVVKHSTKEKVVRVVILTFRNLL--PKGTFGAQ-----MVDLGLPHIIHSLKTQAWS 297
Query: 318 DEDIMNDVEYLNERLQASVQDLSSFDQYATEVKSGRLEWSPVHKSAKFWRENAARLNERG 377
DED+++ + L E L+ ++ LSSFD+Y EV G L+W+P+HK FWREN E
Sbjct: 298 DEDLLDALNQLEEGLKDKIKKLSSFDKYKQEVLLGHLDWNPMHKETNFWRENVTCFEEND 357
Query: 378 QELLRTLVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPN 437
++LR L+ +L+ S DP LAVAC+DI ++++++ G+ I+ L K+RVM L++H++
Sbjct: 358 FQILRVLLTILDTSSDPRSLAVACFDISQFIQYHAAGRVIVADLKAKERVMKLINHENAE 417
Query: 438 VRYEALLAVQKLMV 451
V A+L +Q+L++
Sbjct: 418 VTKNAILCIQRLLL 431
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 37.1 bits (82), Expect = 0.026
Identities = 19/80 (23%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 79 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSEDKSRVKIFRETKFSGNVWQPFLN 136
N + ++F+ ++ ++ S+DHTIQ +L+L +++ + S+ K+ E + Q N
Sbjct: 47 NGETIPQLFITIIRYVLPSEDHTIQKLLLLYLELIEKTDSKGKVLPEMIL---ICQNLRN 103
Query: 137 LLNRQDEFVQHMTARIIAKL 156
L +E+++ +T R + ++
Sbjct: 104 NLQHPNEYIRGVTLRFLCRM 123
>At4g31480.1 68417.m04472 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 971
Score = 37.1 bits (82), Expect = 0.026
Identities = 19/80 (23%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 79 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSEDKSRVKIFRETKFSGNVWQPFLN 136
N + ++F+ ++ ++ S+DHTIQ +L+L +++ + S+ K+ E + Q N
Sbjct: 70 NGETIPQLFITIIRYVLPSEDHTIQKLLLLYLELIEKTDSKGKVLPEMIL---ICQNLRN 126
Query: 137 LLNRQDEFVQHMTARIIAKL 156
L +E+++ +T R + ++
Sbjct: 127 NLQHPNEYIRGVTLRFLCRM 146
>At1g23180.1 68414.m02896 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 834
Score = 35.1 bits (77), Expect = 0.10
Identities = 28/138 (20%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 170 HFYLSWLKDQLKTNNNDYIQSVARCLQMMLRIDEYRFAFLSVDGISTLLSILAS-RVNFQ 228
H L+ + + LK+ ++ ++ A ++ + ++ YR + + + ++L+ +
Sbjct: 146 HGCLNLIVNLLKSESSSACEAAAGLIRSIASVNLYRESVAESGALEEITALLSRPSLATV 205
Query: 229 VQYQLVFCLWVLTFNPLLAEKMNKFNVIPILADILSDSVKEKVTRIVLAVFRNLIEKPED 288
V+ Q + LW LT + + EK+ F+++ +L L D V V NL
Sbjct: 206 VKEQCICALWNLTVDEEIREKVADFDILRLLISFLEDD-DVNVKEAAGGVLANLALSRST 264
Query: 289 QQVAKEHCIAMVQCKVLK 306
++ E + K+LK
Sbjct: 265 HKILVEVGVIPKLAKLLK 282
>At5g03060.1 68418.m00254 expressed protein ; expression supported
by MPSS
Length = 292
Score = 33.5 bits (73), Expect = 0.31
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 269 EKVTRIVLAVFRNLIEKPEDQQVAKEHCIAMVQCKVLKQLSILEQKRSDDEDIMNDVEYL 328
EK + + F+ + E E + + I ++ K+L L LE++RS+ E+ M +++ +
Sbjct: 50 EKDYKSIEESFKQMNEMNEIMKFQYQKQIKELEEKILSLLKDLEKERSEKEEYMKEMKGM 109
Query: 329 NERLQASVQDLSSFDQYATEVKSGRLE 355
+A + DLS +Q K +E
Sbjct: 110 ISEKEAIINDLSVKNQELLIAKEEEVE 136
>At4g24530.1 68417.m03516 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'PsRT17-1 like protein' based on similarity to PsRT17-1
(GP:1778376) [Pisum sativum] which was based upon
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 519
Score = 32.7 bits (71), Expect = 0.55
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 340 SSFDQYATEVKSGRLEWSPVHKSAKFWREN 369
S+ D YAT +++ R++ +PVH SA+++ EN
Sbjct: 181 STRDYYATGIRATRIKTAPVHASAEWYLEN 210
>At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to
SP|Q9UPM8 Adapter-related protein complex 4 epsilon 1
subunit (Epsilon subunit of AP-4) (AP-4 adapter complex
epsilon subunit) {Homo sapiens}; contains Pfam profile:
PF01602 Adaptin N terminal region
Length = 938
Score = 32.7 bits (71), Expect = 0.55
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 50 YLQSQMITQRDHDFIVNLDQRGQKDL-PDKNPDACAEVFLNLLTHISKDHTIQYILVLID 108
YL + DHD I+ + QKDL D CA LN + + + TI +L +
Sbjct: 106 YLAVTLFLNEDHDLIILIVNTIQKDLRSDNYLVVCAA--LNAICRLINEETIPAVLPQVV 163
Query: 109 DILSEDKSRVK 119
++L+ K V+
Sbjct: 164 ELLNHQKEAVR 174
>At2g24070.1 68415.m02875 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 609
Score = 31.5 bits (68), Expect = 1.3
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 173 LSWLKDQLKTNNNDYIQSVARCLQMMLRIDEYRFAFLSVDGISTLLSILASRVNFQVQYQ 232
LS++ D K YI+ V + + R ++RFA +G+S + S++A + V +
Sbjct: 377 LSFIADVKKGKKATYIEDVHQLRLLYNRYSQWRFANARAEGVSYVQSLIAKETLYNVWHA 436
Query: 233 L 233
+
Sbjct: 437 I 437
>At2g37330.1 68415.m04578 expressed protein and genefinder
Length = 273
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 396 VLAVACYDIGEYVRHYPRGKHI--IEQLGGKQRVMYLL 431
+++VA Y G+ RH PRGK++ + L G M+LL
Sbjct: 87 MVSVAGYTAGQRARHVPRGKYVAGLSILAGTSITMFLL 124
>At4g29170.1 68417.m04174 Mnd1 family protein contains Pfam PF03962:
Mnd1 family
Length = 230
Score = 30.7 bits (66), Expect = 2.2
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 280 RNLIEKPE-DQQVAKEHCIAMV-QCKVLKQLSILEQKRSDDEDIMNDVEYLNERLQASVQ 337
R++ +K E D Q + + +V QC+ LK+ ++R++ + D+E ++ L+ +
Sbjct: 82 RSVRQKLESDLQGSNKRLAELVDQCEALKKGREESEERTEALTQLKDIEKKHKDLKNEMV 141
Query: 338 DLSSFDQYATEVKSGRLEWSPVHKSAKFWRENAARLNE 375
+ D E K +E H+SA W +N L +
Sbjct: 142 QFADNDPATLEAKRNAIE--VAHQSANRWTDNIFTLRQ 177
>At5g40140.1 68418.m04871 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 550
Score = 30.3 bits (65), Expect = 2.9
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 176 LKDQLKTNNNDYIQSVARCLQMMLRIDEY-RFAFLSVDGISTLLSILASRVNFQVQYQLV 234
L +LK+N I+ ++ + RIDE R + + IS L S++ SR VQ +
Sbjct: 233 LLTKLKSNRISEIEEALISIRRITRIDESSRISLCTTRVISALKSLIVSRYA-TVQVNVT 291
Query: 235 FCLWVLTFNPLLAEKMNKFNVIPILADIL 263
L L+ K+ + ++P L D+L
Sbjct: 292 AVLVNLSLEKSNKVKIVRSGIVPPLIDVL 320
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 29.9 bits (64), Expect = 3.9
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 373 LNERGQELLRTLVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLS 432
LNE + + L+ L E++RD +V+ Y + H R + + G V+ LS
Sbjct: 137 LNEHFRAATKKLMELTEENRDLIVVVCVAYSTSLEIVHAVRKSCVRKCTNGDDLVLLELS 196
Query: 433 HDDPNVRYEALLAVQKLMV 451
D Y +++ V L++
Sbjct: 197 -DVEECMYTSIVPVPDLVI 214
>At4g14760.1 68417.m02271 M protein repeat-containing protein
contains Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 29.5 bits (63), Expect = 5.1
Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 9/159 (5%)
Query: 233 LVFCLWVLTFN-PLLAEKMNKFNVIPILADILSDSVKEKVTRIVLAVFRNLIEKPEDQQV 291
LV L ++T N L EK + A+I +S+++K ++ F+ L +
Sbjct: 628 LVSQLQIMTANMQTLLEKNSVLEKSLSCANIELESLRDK-SKCFDDFFQFLKNDKSELMK 686
Query: 292 AKEHCIAMVQCKVLKQLSILEQKRSDDEDIMNDVEYLNERLQASVQDL-----SSFDQYA 346
+E ++ + CKV ++L +LE+K ++ E D++ N+ V++L + + A
Sbjct: 687 ERESLVSQL-CKVEEKLGVLEKKYTELEVRYTDLQRDNKLKSHQVEELQVSLAAEKQESA 745
Query: 347 TEVKSGRLEWSPVHKSAKFWRENA-ARLNERGQELLRTL 384
+S + + K+ F RE +R E EL R +
Sbjct: 746 NYKRSTESRLADLQKNVSFLREECRSRKREYEDELDRVV 784
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 29.5 bits (63), Expect = 5.1
Identities = 15/77 (19%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 279 FRNLIEKPEDQQVAKEHCIAMVQCKVLKQLS----ILEQKRSDDEDIMNDVEYLNERLQA 334
++ ++ +Q+ ++ ++Q +VL +L ++++R + E ++ +N++LQ
Sbjct: 420 YQEAVDAMRHEQLGRKEAEMILQ-RVLSELEEKAGFIQEERGEYERVVEAYCLVNQKLQD 478
Query: 335 SVQDLSSFDQYATEVKS 351
SV + S+ +++ E+K+
Sbjct: 479 SVSEQSNMEKFIMELKA 495
>At5g65470.1 68418.m08233 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 504
Score = 29.1 bits (62), Expect = 6.8
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 340 SSFDQYATEVKSGRLEWSPVHKSAKFWRENAA 371
S+ + Y T V+ R++ +PVH SA ++ EN +
Sbjct: 165 STREYYGTAVRETRVKTAPVHASANWYIENVS 196
>At5g60510.1 68418.m07588 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 272
Score = 28.7 bits (61), Expect = 8.9
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 373 LNERGQELLRTLVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLS 432
LNER + + L+ L E++RD +V+ Y + H R + + G LS
Sbjct: 138 LNERFRAATKKLMELTEENRDLIVVVCVAYSTSVEIVHAVRDSCVRKSKTGDGSSALELS 197
Query: 433 HDDPNVRYEALLAVQKLMV 451
D Y +++ V L+V
Sbjct: 198 -DIEECMYTSVVPVPDLVV 215
>At4g36860.2 68417.m05227 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 547
Score = 28.7 bits (61), Expect = 8.9
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 303 KVLKQLSILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFDQYATEVKSGRLEWSPVHKS 362
K+++ S E+ DDED D EY+ +L+A+ ++ Q E + R + + ++
Sbjct: 70 KIIEYKSETEEDDDDDED--EDEEYMRAQLEAAEEEERRVAQAQIEEEEKRRAEAQLEET 127
Query: 363 AKFWRENAARLNERGQELLRTLVHLLE 389
K + ARL E +E+ R+ L E
Sbjct: 128 EKLLAK--ARLEE--EEMRRSKAQLEE 150
>At2g45490.1 68415.m05658 protein kinase, putative contains protein
kinase domain, Pfam:PF00069; similar to protein kinase
p46XlEg22 [Xenopus laevis] gi|609280|emb|CAA78914
Length = 288
Score = 28.7 bits (61), Expect = 8.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 35 IRASEIRQTRINWQSYLQSQMITQRDHDFIVN 66
+++S R+T YL +M+ RDHD+ V+
Sbjct: 168 VQSSNKRKTMCGTLDYLAPEMVENRDHDYAVD 199
>At1g51350.1 68414.m05775 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 666
Score = 28.7 bits (61), Expect = 8.9
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 369 NAARLNERGQELLRTLVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVM 428
+A R N ++ LV LL V +AV + V + K + GG +++
Sbjct: 399 SAGRFNS--DHVMLPLVQLLHDPSSSVQVAVLGA-LNNIVMDFSSPKSSFIEYGGIKQLT 455
Query: 429 YLLSHDDPNVRYEALLAVQKLM 450
L DPN R AL A++ LM
Sbjct: 456 ELSKSMDPNTRCSALRALRNLM 477
>At1g48760.2 68414.m05457 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 28.7 bits (61), Expect = 8.9
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 415 KHIIEQLGGKQRVMYLLSHDDPNVRYEAL 443
KH+ L K+ V+ +S +DPNV+ EAL
Sbjct: 326 KHLWAVLENKEVVVKAMSDEDPNVKLEAL 354
>At1g48760.1 68414.m05456 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 28.7 bits (61), Expect = 8.9
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 415 KHIIEQLGGKQRVMYLLSHDDPNVRYEAL 443
KH+ L K+ V+ +S +DPNV+ EAL
Sbjct: 326 KHLWAVLENKEVVVKAMSDEDPNVKLEAL 354
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 28.7 bits (61), Expect = 8.9
Identities = 25/133 (18%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 209 LSVDGISTLLSILASRVNFQVQYQLVFCLWVLTFNPLL-AEKMNKFNVIPILADILSDSV 267
L ++G + + +LA ++N + +Y ++ F+ +L ++ + +++ +L ++S
Sbjct: 1417 LPIEGDTIVKQLLALQINAE-KYFFGIRKSLVEFDEVLEVQRKHVYDLRQLLLTGENESC 1475
Query: 268 KEKVTRIVLAVFRNLIEKPEDQQVAKEHCIAMVQCKVLKQLSILEQKRSDDEDIMNDVEY 327
+ + + + AV ++ + Q +H K+LK+ + D+E ++ +E
Sbjct: 1476 SQHIFQYMQAVVDEIVVGNSNPQ---KHPRYWSLAKLLKEFMAISGNLLDEETMLQSLEN 1532
Query: 328 LNERLQASVQDLS 340
L+E ++DLS
Sbjct: 1533 LHEGSSIEMEDLS 1545
>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
gi|12044357|gb|AF312027.1|AF312027
Length = 1399
Score = 28.7 bits (61), Expect = 8.9
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 2 GSHVKRRENQEEKYNPTKVFVREDMIAATSVLQIRASEIRQTRIN 46
G + E ++E+Y + +RE+M+ SV +RA +++ N
Sbjct: 228 GKQMYNPEKEKEEYEAARTELREEMMRGASVEDLRAKLLKKDNSN 272
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.322 0.135 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,766,712
Number of Sequences: 28952
Number of extensions: 435868
Number of successful extensions: 1241
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1222
Number of HSP's gapped (non-prelim): 30
length of query: 478
length of database: 12,070,560
effective HSP length: 84
effective length of query: 394
effective length of database: 9,638,592
effective search space: 3797605248
effective search space used: 3797605248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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