Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000595-TA|BGIBMGA000595-PA|IPR004142|Ndr
         (54 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    30   0.042
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    25   1.6  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    24   2.1  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    24   2.8  
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    23   4.9  
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family...    23   4.9  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    22   8.5  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    22   8.5  

>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 29.9 bits (64), Expect = 0.042
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 3   SANFLSYKLIYKDASFQPFFGYVDMRALLENF--CVYHVNAPGQEEGAPSLP 52
           S + + Y LI+  +     F YVD+ +LL  F  CVY  +  G      S P
Sbjct: 646 SGSSICYSLIFSHSLLDLTFQYVDIASLLSQFLLCVYDPSNVGHSFALASFP 697


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 9   YKLIYKDASFQPFFGYVDMRALLENFC 35
           YK +YKD    PFF  +   A  EN C
Sbjct: 131 YKELYKDWQGSPFFFALFSNAFGENQC 157


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 2/18 (11%)

Query: 32  ENFC--VYHVNAPGQEEG 47
           E FC  VYH+N  G+E G
Sbjct: 131 EAFCTEVYHINGMGEESG 148


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 639

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 23 GYVDMRALLENFCVYHVNAPGQEE 46
          G + + ALLENFC  + N P + +
Sbjct: 39 GRMLLTALLENFCQLYDNNPAKSK 62


>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 24  YVDMRALLENFCVYHVNAPGQEEGA 48
           Y+    L + FCV  VNA G E  A
Sbjct: 232 YLCFNTLAQYFCVRGVNALGAETSA 256


>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 1   MNSANFLSYKLI---YKDASFQPFFGYVDMRALLE 32
           +N + +  ++LI   Y+ A    FF YVD+R L E
Sbjct: 212 LNFSTWFFWQLIKGRYEVAPESKFFNYVDVRDLAE 246


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 10  KLIYKDASFQPFFGYVDMRALLENF 34
           ++  ++AS +PF GY+       NF
Sbjct: 202 RVTIENASLKPFSGYIKSHMSTSNF 226


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
          transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 1  MNSANFLSYKLIYKDASFQPFFG 23
          MN+A+++    +  + +FQP +G
Sbjct: 65 MNNASYIVTAYLITNTAFQPLYG 87


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 282,762
Number of Sequences: 5004
Number of extensions: 8997
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 8
length of query: 54
length of database: 2,362,478
effective HSP length: 35
effective length of query: 19
effective length of database: 2,187,338
effective search space: 41559422
effective search space used: 41559422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)