Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000595-TA|BGIBMGA000595-PA|IPR004142|Ndr
         (54 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22347| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   7e-08
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.075
SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)                   25   8.6  

>SB_22347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 20/38 (52%), Positives = 29/38 (76%)

Query: 16  ASFQPFFGYVDMRALLENFCVYHVNAPGQEEGAPSLPE 53
           ++F  FF +VD++ LLE+FC+YH++APGQE     LPE
Sbjct: 74  SAFLGFFNFVDVQPLLEHFCIYHIDAPGQENCEKQLPE 111


>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 31.9 bits (69), Expect = 0.075
 Identities = 10/27 (37%), Positives = 20/27 (74%)

Query: 18  FQPFFGYVDMRALLENFCVYHVNAPGQ 44
           F+ F  + D++++ + F +YH++APGQ
Sbjct: 830 FEKFLMHEDIKSIKDRFVIYHLDAPGQ 856


>SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)
          Length = 98

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 3  SANFLSYKLIYKDASFQPFFGYVDMRALLENFCVYHVNAPGQEEGAPSLPEE 54
          +++ L +K   K  S  P  G  ++  + E+  V H N P  E G+ ++  E
Sbjct: 39 NSDCLFFKNTLKKLSVNPIPGIEEVNMIKEDGTVIHFNNPKAEMGSGAVNAE 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,892,041
Number of Sequences: 59808
Number of extensions: 53680
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 3
length of query: 54
length of database: 16,821,457
effective HSP length: 34
effective length of query: 20
effective length of database: 14,787,985
effective search space: 295759700
effective search space used: 295759700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)