GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000595-TA|BGIBMGA000595-PA|IPR004142|Ndr
         (54 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    21   0.74 
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    21   0.74 
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    21   0.74 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    20   1.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    19   3.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      19   3.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      19   3.0  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           19   5.2  

>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 0.74
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 27  MRALLENFCVYHVNA 41
           + ALLE F +YH  A
Sbjct: 147 LSALLEGFTLYHTTA 161


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 0.74
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 27  MRALLENFCVYHVNA 41
           + ALLE F +YH  A
Sbjct: 147 LSALLEGFTLYHTTA 161


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 0.74
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 27  MRALLENFCVYHVNA 41
           + ALLE F +YH  A
Sbjct: 147 LSALLEGFTLYHTTA 161


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.2 bits (40), Expect = 1.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 39  VNAPGQEEGAPSLPEE 54
           V  PG ++GAP+  E+
Sbjct: 214 VKKPGAKQGAPTAEEK 229


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.4 bits (38), Expect = 3.0
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 3    SANFLSYKLIYKDASFQPFFGY 24
            + N L++KL   ++  +P  GY
Sbjct: 1408 TTNSLTFKLKPHESDVEPIHGY 1429


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 19.4 bits (38), Expect = 3.0
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query: 35  CVYHVNAPGQE 45
           C YH  APG +
Sbjct: 615 CCYHAVAPGTD 625


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 19.4 bits (38), Expect = 3.0
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query: 35  CVYHVNAPGQE 45
           C YH  APG +
Sbjct: 507 CCYHAVAPGTD 517


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 18.6 bits (36), Expect = 5.2
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 15  DASFQPFFGYVDMRALLENFCVYHVNAPGQEE 46
           ++SF     Y +     ENF  Y   +P  EE
Sbjct: 210 ESSFSAASSYTNTIYHQENFENYEPKSPEDEE 241


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,384
Number of Sequences: 317
Number of extensions: 435
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 54
length of database: 114,650
effective HSP length: 34
effective length of query: 20
effective length of database: 103,872
effective search space:  2077440
effective search space used:  2077440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.6 bits)
S2: 34 (17.8 bits)