GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000595-TA|BGIBMGA000595-PA|IPR004142|Ndr
         (54 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0031 - 5832475-5832696,5832789-5833064,5833303-5833380,583...    37   0.002
06_03_0479 - 21289903-21290124,21290207-21290342,21290435-212904...    34   0.012
02_02_0121 + 7005356-7005418,7007533-7007632,7007713-7007810,700...    34   0.012
01_01_0653 - 4981517-4981738,4981841-4981976,4982066-4982121,498...    31   0.11 

>05_02_0031 -
           5832475-5832696,5832789-5833064,5833303-5833380,
           5833464-5833550,5833639-5833699,5833792-5833880,
           5834001-5834098,5834197-5834296,5834876-5834953
          Length = 362

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 30  LLENFCVYHVNAPGQEEGAPSLPEE 54
           LL NFC+YH+N  G E GA  +P +
Sbjct: 77  LLHNFCIYHINPQGHELGAAPIPSD 101


>06_03_0479 -
          21289903-21290124,21290207-21290342,21290435-21290490,
          21290734-21290811,21290902-21290988,21291067-21291127,
          21291220-21291308,21291448-21291545,21291655-21291754,
          21293968-21294030
          Length = 329

 Score = 34.3 bits (75), Expect = 0.012
 Identities = 12/19 (63%), Positives = 15/19 (78%)

Query: 30 LLENFCVYHVNAPGQEEGA 48
          LL NFC+YH++ PG E GA
Sbjct: 72 LLHNFCIYHISPPGHELGA 90


>02_02_0121 +
          7005356-7005418,7007533-7007632,7007713-7007810,
          7007933-7008021,7008111-7008171,7008253-7008339,
          7008409-7008486,7008583-7008639,7008731-7008786,
          7008877-7009012,7009103-7009324
          Length = 348

 Score = 34.3 bits (75), Expect = 0.012
 Identities = 12/19 (63%), Positives = 15/19 (78%)

Query: 30 LLENFCVYHVNAPGQEEGA 48
          LL NFC+YH++ PG E GA
Sbjct: 72 LLHNFCIYHISPPGHELGA 90


>01_01_0653 -
          4981517-4981738,4981841-4981976,4982066-4982121,
          4982228-4982284,4982373-4982450,4982533-4982619,
          4982707-4982767,4982862-4982950,4983048-4983145,
          4983242-4983341,4983983-4984042
          Length = 347

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 30 LLENFCVYHVNAPGQEEGAPSLPEE 54
          LL NFC+YH+   G E GA  +  +
Sbjct: 71 LLHNFCIYHITPQGHELGAAPISSD 95


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,684,938
Number of Sequences: 37544
Number of extensions: 50650
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 4
length of query: 54
length of database: 14,793,348
effective HSP length: 35
effective length of query: 19
effective length of database: 13,479,308
effective search space: 256106852
effective search space used: 256106852
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)