GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000595-TA|BGIBMGA000595-PA|IPR004142|Ndr
         (54 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132847-2|CAB63372.1|  343|Caenorhabditis elegans Hypothetical ...    48   1e-06
Z47808-8|CAA87777.2| 1087|Caenorhabditis elegans Hypothetical pr...    27   2.1  
U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidan...    25   4.8  
DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagella...    25   4.8  
AF067613-13|ABA54415.1|  443|Caenorhabditis elegans Hypothetical...    25   4.8  

>AL132847-2|CAB63372.1|  343|Caenorhabditis elegans Hypothetical
           protein Y48G10A.3 protein.
          Length = 343

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 15  DASFQPFFGYVDMRALLENFCVYHVNAPGQEEGAPSLPE 53
           +++FQ FF +V +    + FC+Y+VNAPGQE  A  LPE
Sbjct: 63  ESNFQNFFQFVSIAEFADKFCIYNVNAPGQEMDAQPLPE 101


>Z47808-8|CAA87777.2| 1087|Caenorhabditis elegans Hypothetical
           protein D2013.8a protein.
          Length = 1087

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 30  LLENFCVYHVNAPGQEEGAPSL 51
           LL+N    HVN P +EE AP L
Sbjct: 633 LLQNVEKTHVNVPNEEEDAPIL 654


>U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidance
            abnormal protein1 protein.
          Length = 1732

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 2    NSANFLSYKLIYKDASFQPFFGYVDM 27
            N ANF  YKL+ ++   +P F Y ++
Sbjct: 1465 NPANFSIYKLLMEETLAKPRFDYTEI 1490


>DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagellar
            transport protein protein.
          Length = 1737

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 2    NSANFLSYKLIYKDASFQPFFGYVDM 27
            N ANF  YKL+ ++   +P F Y ++
Sbjct: 1470 NPANFSIYKLLMEETLAKPRFDYTEI 1495


>AF067613-13|ABA54415.1|  443|Caenorhabditis elegans Hypothetical
           protein F56D6.1 protein.
          Length = 443

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 12  IYKDASFQPFFGYVDMRALLENFCVYHVNAPGQEEGAPSLP 52
           IY   S   F  +++   L E + +Y VNA    +G+ +LP
Sbjct: 311 IYSIESDSNFSHFIEWMPLRERYPIYAVNARVLGQGSQALP 351


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,483,372
Number of Sequences: 27539
Number of extensions: 46282
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 5
length of query: 54
length of database: 12,573,161
effective HSP length: 35
effective length of query: 19
effective length of database: 11,609,296
effective search space: 220576624
effective search space used: 220576624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)