GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000595-TA|BGIBMGA000595-PA|IPR004142|Ndr
         (54 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    24   0.17 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    19   6.3  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    19   6.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              18   8.4  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.8 bits (49), Expect = 0.17
 Identities = 11/18 (61%), Positives = 11/18 (61%)

Query: 22  FGYVDMRALLENFCVYHV 39
           FGY DMR    NF VY V
Sbjct: 283 FGYQDMRNRGNNFPVYQV 300


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 2   NSANFLSYKLIYK 14
           NSA F +YKL ++
Sbjct: 560 NSAVFTNYKLYWR 572


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
          finger domain-Z2 isoform protein.
          Length = 71

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 24 YVDMRALLENFCVYHVNAPG 43
          Y    +L+ +   YH + PG
Sbjct: 45 YCSRNSLMTHIYTYHKSRPG 64


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 3   SANFLSYKLIYKDASFQPFFGYV 25
           SA+  SY  +  +  F   +G+V
Sbjct: 688 SADLSSYNCVPINVQFSVLYGFV 710


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,357
Number of Sequences: 429
Number of extensions: 578
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 54
length of database: 140,377
effective HSP length: 34
effective length of query: 20
effective length of database: 125,791
effective search space:  2515820
effective search space used:  2515820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.0 bits)
S2: 35 (18.2 bits)