GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000595-TA|BGIBMGA000595-PA|IPR004142|Ndr
         (54 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56750.1 68418.m07083 Ndr family protein similar to SP|O23969...    35   0.006
At2g19620.1 68415.m02292 Ndr family protein similar to SP|O23969...    34   0.010
At5g11790.1 68418.m01376 Ndr family protein similar to SP|O23969...    33   0.017

>At5g56750.1 68418.m07083 Ndr family protein similar to SP|O23969
          Pollen specific protein SF21 {Helianthus annuus};
          contains Pfam profile PF03096: Ndr family
          Length = 346

 Score = 35.1 bits (77), Expect = 0.006
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 30 LLENFCVYHVNAPGQEEG-APSLPEE 54
          LL NFC+YH++ PG E G AP  P +
Sbjct: 71 LLHNFCIYHISPPGHELGAAPICPND 96


>At2g19620.1 68415.m02292 Ndr family protein similar to SP|O23969
          Pollen specific protein SF21 {Helianthus annuus};
          contains Pfam profile PF03096: Ndr family
          Length = 347

 Score = 34.3 bits (75), Expect = 0.010
 Identities = 12/19 (63%), Positives = 15/19 (78%)

Query: 30 LLENFCVYHVNAPGQEEGA 48
          LL NFC+YH++ PG E GA
Sbjct: 71 LLHNFCIYHISPPGHEFGA 89


>At5g11790.1 68418.m01376 Ndr family protein similar to SP|O23969
          Pollen specific protein SF21 {Helianthus annuus};
          contains Pfam profile PF03096: Ndr family
          Length = 344

 Score = 33.5 bits (73), Expect = 0.017
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 30 LLENFCVYHVNAPGQEEGAPSL 51
          LL NFC+YH++  G E GAP +
Sbjct: 71 LLHNFCIYHISPLGHELGAPMI 92


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,378,302
Number of Sequences: 28952
Number of extensions: 42702
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 3
length of query: 54
length of database: 12,070,560
effective HSP length: 35
effective length of query: 19
effective length of database: 11,057,240
effective search space: 210087560
effective search space used: 210087560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)