Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000594-TA|BGIBMGA000594-PA|IPR004142|Ndr
         (62 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S...    26   0.68 
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    25   0.90 
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    24   2.1  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    23   4.8  
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    23   4.8  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    22   8.3  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    22   8.3  

>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
           Idi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 227

 Score = 25.8 bits (54), Expect = 0.68
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 10  QLQFPSARRFSGEAACTEVRVRTDRGDILV-AVQGDRNKPAIITYHDLGLNCKY 62
           ++ FPS   ++       + V  +RG+ L  AV+G +N      +H+LG+  KY
Sbjct: 75  KITFPSL--WTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKY 126


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 0.90
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 31 RTDRGDILVAVQGDRNKPAIITYH 54
          R  + D+L   +G+R  P+I++YH
Sbjct: 42 RDGKTDVLANEEGNRQIPSILSYH 65


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 1   MDDIELRNIQLQFPSARRF 19
           M DIEL N+  +FPS   F
Sbjct: 732 MSDIELHNLCCKFPSINSF 750


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 14  PSARRFSGEAACTEVRVRTD 33
           P  +RF G+A  T++ +R+D
Sbjct: 203 PPLKRFRGDAGMTQMPLRSD 222


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 30  VRTDRGDILVAVQGDRNKPAIITYH 54
           + +D   +   V+G+RNKPA +  H
Sbjct: 95  LNSDIASLQQVVKGNRNKPAQMNQH 119


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 202

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 23 AACTEVRVRTDRGDILVAVQGDRNKPAIITYH 54
          A    ++V TD G + V   G   K  +  YH
Sbjct: 56 AQLQSIQVNTDNGKVAVQSNGVSTKLRMAKYH 87


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 28 VRVRTDRGDILVAVQGDRNKPAIITYH 54
          ++ RTD+  I+V V GD  +   + YH
Sbjct: 18 LKKRTDKKRIIVLVLGDIARSPRMQYH 44


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.140    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,570
Number of Sequences: 5004
Number of extensions: 6503
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 7
length of query: 62
length of database: 2,362,478
effective HSP length: 43
effective length of query: 19
effective length of database: 2,147,306
effective search space: 40798814
effective search space used: 40798814
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)