Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000594-TA|BGIBMGA000594-PA|IPR004142|Ndr
         (62 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22347| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-05
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   0.71 
SB_42257| Best HMM Match : Porphobil_deamC (HMM E-Value=6.7)           27   2.9  
SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.8  
SB_6692| Best HMM Match : WD40 (HMM E-Value=0.0056)                    25   8.8  

>SB_22347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 27 EVRVRTDRGDILVAVQGDRNKPAIITYHDLGLN 59
          E  V T  GD+ V++QG   KPAI+T+HD+G N
Sbjct: 39 EKNVETKYGDVRVSMQGTEGKPAIVTFHDIGQN 71


>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 20  SGEAACTEVRVRTDRGDILVAVQGDRNKPAIITYHDLGLNCK 61
           SG+ A TE     D+ D     +  + K  +IT+HDLG+N K
Sbjct: 789 SGKNAVTEGEEAKDKTD---EKENVKKKDVMITFHDLGMNHK 827


>SB_42257| Best HMM Match : Porphobil_deamC (HMM E-Value=6.7)
          Length = 199

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/52 (28%), Positives = 24/52 (46%)

Query: 10  QLQFPSARRFSGEAACTEVRVRTDRGDILVAVQGDRNKPAIITYHDLGLNCK 61
           +L+ P  + F G     +VR   +  DI  A+  D   PA +   +  L+CK
Sbjct: 52  KLEKPHPKTFIGAGKLEDVRSYIETHDIGTAIFDDELSPAQLRNIEKALDCK 103


>SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 816

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 17  RRFSGEAACTEVRVRTDRGDILVAVQGDRNKPAIITYHDLGLNCKY 62
           R F+G  A  E+    ++G  ++ V      P + +   +GLNC +
Sbjct: 542 REFTGTWAHPEIYKALEKGYRVIRVYEIEKNPGLRSVAKMGLNCMW 587


>SB_6692| Best HMM Match : WD40 (HMM E-Value=0.0056)
          Length = 272

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 2   DDIELRNIQLQFPSARRFSGEAACTEVRVRTDRGDILVAVQGDR-NKPAIITYHDL 56
           ++  L+N Q      + F  E ACTE     + GD +  +  D  NK   + Y  L
Sbjct: 88  ENTTLKNTQGDVEKEKHFESETACTE-----EIGDTVAVIDNDLVNKQYAVNYKRL 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.140    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,827
Number of Sequences: 59808
Number of extensions: 56157
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 5
length of query: 62
length of database: 16,821,457
effective HSP length: 41
effective length of query: 21
effective length of database: 14,369,329
effective search space: 301755909
effective search space used: 301755909
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)