GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000594-TA|BGIBMGA000594-PA|IPR004142|Ndr
         (62 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0479 - 21289903-21290124,21290207-21290342,21290435-212904...    41   1e-04
01_01_0653 - 4981517-4981738,4981841-4981976,4982066-4982121,498...    41   1e-04
05_02_0031 - 5832475-5832696,5832789-5833064,5833303-5833380,583...    41   1e-04
02_02_0121 + 7005356-7005418,7007533-7007632,7007713-7007810,700...    40   2e-04
01_06_1818 - 40093327-40093384,40093501-40093580,40093661-400939...    28   0.82 
04_01_0359 + 4711289-4713052,4713423-4713950                           26   3.3  
12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,570...    25   5.8  
06_01_0618 - 4492057-4492590,4492780-4493192,4493714-4494026,449...    25   7.7  

>06_03_0479 -
          21289903-21290124,21290207-21290342,21290435-21290490,
          21290734-21290811,21290902-21290988,21291067-21291127,
          21291220-21291308,21291448-21291545,21291655-21291754,
          21293968-21294030
          Length = 329

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 27 EVRVRTDRGDILVAVQGDRNKPAIITYHDLGLN 59
          E  ++T+ G + VAV GD +KPA++TY D+ LN
Sbjct: 22 EHHIQTNHGSVSVAVYGDHDKPALVTYPDIALN 54


>01_01_0653 -
          4981517-4981738,4981841-4981976,4982066-4982121,
          4982228-4982284,4982373-4982450,4982533-4982619,
          4982707-4982767,4982862-4982950,4983048-4983145,
          4983242-4983341,4983983-4984042
          Length = 347

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 27 EVRVRTDRGDILVAVQGDRNKPAIITYHDLGLN 59
          E RVRT  G + V+V GD +KPA+ITY D+ LN
Sbjct: 21 EHRVRTRYGSVSVSVFGDEDKPALITYPDVALN 53


>05_02_0031 -
          5832475-5832696,5832789-5833064,5833303-5833380,
          5833464-5833550,5833639-5833699,5833792-5833880,
          5834001-5834098,5834197-5834296,5834876-5834953
          Length = 362

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 27 EVRVRTDRGDILVAVQGDRNKPAIITYHDLGLN 59
          E +VRT  G + VA+ GD +KPA+ITY D+ LN
Sbjct: 27 EHQVRTRCGSLSVAIYGDEDKPALITYPDIALN 59


>02_02_0121 +
          7005356-7005418,7007533-7007632,7007713-7007810,
          7007933-7008021,7008111-7008171,7008253-7008339,
          7008409-7008486,7008583-7008639,7008731-7008786,
          7008877-7009012,7009103-7009324
          Length = 348

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 27 EVRVRTDRGDILVAVQGDRNKPAIITYHDLGLN 59
          E  + T+ G + VAV GD +KPA++TY D+ LN
Sbjct: 22 EHHIHTNHGPVSVAVYGDHDKPALVTYPDIALN 54


>01_06_1818 -
           40093327-40093384,40093501-40093580,40093661-40093946,
           40095007-40095291,40095386-40095513,40095625-40096560,
           40096650-40096712,40096801-40096854,40096963-40097139,
           40097452-40097583,40097666-40097785,40097935-40098627,
           40098760-40099158,40099263-40099271
          Length = 1139

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 33  DRGDILVAVQGDRNKPAIITYHDLGLN 59
           D GD+   + G  N P ++T H LG N
Sbjct: 257 DAGDVAALLSGALNVPMVLTGHSLGRN 283


>04_01_0359 + 4711289-4713052,4713423-4713950
          Length = 763

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 19  FSGEAACT--EVRVRTDRGDILVAVQGDRNKPAIITYHDLGLN 59
           FSG   C   E+R+R  RG++L +    R +    T  ++GL+
Sbjct: 537 FSGSYVCVKFEIRIRESRGNLLSSSSSRRLQGPNSTSSEMGLS 579


>12_01_0671 -
           5702051-5702159,5702493-5703216,5703910-5704476,
           5704654-5704873,5705303-5707207
          Length = 1174

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 19  FSGEAACTEVRVRTDRGDILVAVQGDRNKPAIITYHDLGLN 59
           F    +CT ++    R  +L++ +G    PA+    DL +N
Sbjct: 135 FQSSTSCTPIKRVARRSRVLLSKKGTARDPAVSKLLDLHVN 175


>06_01_0618 -
          4492057-4492590,4492780-4493192,4493714-4494026,
          4495257-4495828,4498324-4498600
          Length = 702

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 13 FPSARRFSGEAACTEVRVRTDRGD 36
          F   R   G AA  E+RVR  RGD
Sbjct: 61 FHRRRHRPGSAAVVELRVRDSRGD 84


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.140    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,734,110
Number of Sequences: 37544
Number of extensions: 50053
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 8
length of query: 62
length of database: 14,793,348
effective HSP length: 42
effective length of query: 20
effective length of database: 13,216,500
effective search space: 264330000
effective search space used: 264330000
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)