GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000594-TA|BGIBMGA000594-PA|IPR004142|Ndr
         (62 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132847-2|CAB63372.1|  343|Caenorhabditis elegans Hypothetical ...    37   0.002
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    26   2.9  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    26   2.9  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    26   2.9  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    26   2.9  
Z81514-2|CAB04189.1|  283|Caenorhabditis elegans Hypothetical pr...    25   5.0  
U41274-4|AAA82460.1|  297|Caenorhabditis elegans Hypothetical pr...    25   6.6  
Z66495-3|CAA91270.2|  484|Caenorhabditis elegans Hypothetical pr...    25   8.8  
U50072-1|ABP49527.1|  378|Caenorhabditis elegans Hypothetical pr...    25   8.8  

>AL132847-2|CAB63372.1|  343|Caenorhabditis elegans Hypothetical
          protein Y48G10A.3 protein.
          Length = 343

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 3/37 (8%)

Query: 26 TEVRVRTDRGDILVAVQGDRNKP---AIITYHDLGLN 59
          TE +V T  G I V++ GDRN P    ++T+HDLGL+
Sbjct: 25 TEEKVNTAFGAIKVSIYGDRNDPKKVPMVTFHDLGLD 61


>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
           protein.
          Length = 4280

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 20  SGEAACTEVRVRTDRGDILVAVQGDRNKPAIITYH 54
           SGEA C+  RV     D++V  + + +   +  YH
Sbjct: 901 SGEALCSTPRVLAQENDLIVKWKSEGDGRGVYGYH 935


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
           protein.
          Length = 4450

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 20  SGEAACTEVRVRTDRGDILVAVQGDRNKPAIITYH 54
           SGEA C+  RV     D++V  + + +   +  YH
Sbjct: 901 SGEALCSTPRVLAQENDLIVKWKSEGDGRGVYGYH 935


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
           805, isoform b protein.
          Length = 4450

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 20  SGEAACTEVRVRTDRGDILVAVQGDRNKPAIITYH 54
           SGEA C+  RV     D++V  + + +   +  YH
Sbjct: 901 SGEALCSTPRVLAQENDLIVKWKSEGDGRGVYGYH 935


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
           805, isoform a protein.
          Length = 4280

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 20  SGEAACTEVRVRTDRGDILVAVQGDRNKPAIITYH 54
           SGEA C+  RV     D++V  + + +   +  YH
Sbjct: 901 SGEALCSTPRVLAQENDLIVKWKSEGDGRGVYGYH 935


>Z81514-2|CAB04189.1|  283|Caenorhabditis elegans Hypothetical
          protein F26F2.3 protein.
          Length = 283

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 2  DDIELRNIQLQFPSARRFSGEAACTEVRVRTDRGDILVAVQGDR---NKPAI---ITYHD 55
          D I L N+Q +  S   F      T+++V+  RG     + G R   +K  I   I Y D
Sbjct: 11 DRIRLSNVQQRDGSVSHFYQHQEGTDIQVQVRRGS--AKLDGQRVPFHKLTITPDIPYRD 68

Query: 56 LGLNCK 61
          LGL  K
Sbjct: 69 LGLRLK 74


>U41274-4|AAA82460.1|  297|Caenorhabditis elegans Hypothetical
          protein T04G9.4 protein.
          Length = 297

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 15 SARRFSGEAACTEVRVRTDRGDILVAVQGD 44
          SA++FSGE   T    RT+RG   +AV  D
Sbjct: 66 SAQKFSGEPWNTIRFERTERGKPFLAVPAD 95


>Z66495-3|CAA91270.2|  484|Caenorhabditis elegans Hypothetical
           protein C36A4.4 protein.
          Length = 484

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 20  SGEAACTEVRVRTDRGDILVAVQGDRNKPAIITYHDLG 57
           S EA      V   +G+++ +V  DR  P ++ Y +LG
Sbjct: 272 SNEADVATKCVPKQKGELVGSVCLDRGLPRVVEYSELG 309


>U50072-1|ABP49527.1|  378|Caenorhabditis elegans Hypothetical
           protein K06B9.2 protein.
          Length = 378

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 20  SGEAACTEVRVRTDRGDILVAVQGDRNKPAIITYHDLG 57
           S EA      V   +G+++ +V  DR  P ++ Y +LG
Sbjct: 166 SNEADVATKCVPKQKGELVGSVFLDRGLPRVVEYSELG 203


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.140    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,425,682
Number of Sequences: 27539
Number of extensions: 39660
Number of successful extensions: 72
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 13
length of query: 62
length of database: 12,573,161
effective HSP length: 42
effective length of query: 20
effective length of database: 11,416,523
effective search space: 228330460
effective search space used: 228330460
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)