GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000593-TA|BGIBMGA000593-PA|IPR000436|Sushi/SCR/CCP,
IPR007110|Immunoglobulin-like, IPR013106|Immunoglobulin V-set
         (333 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.4  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   5.5  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   5.5  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   7.2  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/33 (27%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 276 DLMIYD-CEDGYDIVGESSIVCTENGYWSHPPP 307
           D+++Y+  ++G+D   ++++V   NG   + PP
Sbjct: 89  DVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPP 121


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/33 (27%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 276 DLMIYD-CEDGYDIVGESSIVCTENGYWSHPPP 307
           D+++Y+  ++G+D   ++++V   NG   + PP
Sbjct: 89  DVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPP 121


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)

Query: 8   WVPKFPECVPTSVITNFTGDAP 29
           W  + PEC    V   FT  AP
Sbjct: 139 WADQVPECKNEEVAGGFTCPAP 160


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)

Query: 8   WVPKFPECVPTSVITNFTGDAP 29
           W  + PEC    V   FT  AP
Sbjct: 139 WADQVPECKNEEVAGGFTCPAP 160


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 6   GEWVPKFPECVPTSVITNFTGDAPP 30
           G+WVP+          T  T +APP
Sbjct: 434 GQWVPEKSTSTTQRTTTVSTTEAPP 458


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.137    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,275
Number of Sequences: 317
Number of extensions: 4262
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 333
length of database: 114,650
effective HSP length: 57
effective length of query: 276
effective length of database: 96,581
effective search space: 26656356
effective search space used: 26656356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)