Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000593-TA|BGIBMGA000593-PA|IPR000436|Sushi/SCR/CCP,
IPR007110|Immunoglobulin-like, IPR013106|Immunoglobulin V-set
(333 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0101 + 12561109-12561321,12564041-12564883 37 0.020
05_05_0262 - 23666184-23666262,23666564-23667759 31 1.3
07_01_1054 + 9250298-9250428,9250889-9251489 29 5.2
05_07_0175 - 28164252-28164529,28165381-28166560 29 5.2
09_04_0609 - 18929600-18929646,18929753-18929924,18930304-189304... 29 6.9
01_03_0084 - 12286416-12286514,12286632-12286683,12286771-122868... 29 6.9
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 28 9.2
>01_03_0101 + 12561109-12561321,12564041-12564883
Length = 351
Score = 37.1 bits (82), Expect = 0.020
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 18 TSVITNFTG--DAPPTIQYAIISGSAVVEPTGELFVFPDSTLRLDCVTPRALGN 69
TS + NFTG DA P I A V P+ FP++T+ +D +TP AL N
Sbjct: 201 TSRLYNFTGVGDADPAISAAYAFLLRAVCPSNSSQFFPNTTVDMDVITPAALDN 254
>05_05_0262 - 23666184-23666262,23666564-23667759
Length = 424
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 268 KHGKYTVGDLMIYDCEDGYDIVGESSIVCTENGYWSHPPPFCLLPSVIKKADTIFIE 324
K G Y + D +YD E + C++NG W PPP +V + D + E
Sbjct: 330 KEGVYFLDDGRLYD-EASQFVNPLPQYPCSDNGKWLPPPPAAAAEAVTGRVDKLLPE 385
>07_01_1054 + 9250298-9250428,9250889-9251489
Length = 243
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 256 PEKGRLLIEPSSKHGKYTVGDLMIYDCEDGYDIVGESSIVCTENG-YWSHP 305
P L +EPS + D+M +DC DG ++ ++ V ++G W P
Sbjct: 184 PRWTSLYLEPSGGGDRRRGSDVMRWDCSDGGNVEAVAAAVGAKSGTLWPDP 234
>05_07_0175 - 28164252-28164529,28165381-28166560
Length = 485
Score = 29.1 bits (62), Expect = 5.2
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 15/76 (19%)
Query: 255 VPE-KGRLLIEPSSKHGKYTVGD-------LMIYDCEDGYD---IVGESSIVCTENGYWS 303
+PE GR+L Y VGD + +D +D Y I ++ C +NG WS
Sbjct: 305 MPELDGRMLFVGHGCSRSYEVGDFPGFQEGIYFFDDQDSYSVSSIAEDNEYTCFDNGKWS 364
Query: 304 HPPP----FCLLPSVI 315
PP +C P +
Sbjct: 365 AGPPLMETYCFWPDQV 380
>09_04_0609 -
18929600-18929646,18929753-18929924,18930304-18930498,
18930691-18930801,18930885-18931097,18931643-18931720,
18931894-18932001,18932175-18932316,18932413-18933761,
18934492-18935121
Length = 1014
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 37 ISGSAVVEPTGELFVFPDSTLRLDCVTPRALGNPEWSWTQALGNYET 83
+ GS +++P+ + F P +T+ + TP G P +GNYET
Sbjct: 529 VFGSPIIDPSEQKFQIPVTTVAANASTPIKGGKP-------IGNYET 568
>01_03_0084 -
12286416-12286514,12286632-12286683,12286771-12286871,
12287498-12287650,12287703-12287762,12287872-12287998,
12288581-12288708,12289196-12289291,12289473-12289526,
12289603-12289689,12290954-12291057,12291163-12291246,
12291374-12291422,12291523-12291886,12292186-12292226
Length = 532
Score = 28.7 bits (61), Expect = 6.9
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 152 GHSAHFSCQSGFHLNGSAILTCMGNGH---WSTSLPTCLETF--CPMLKSLGPHLSFVEY 206
GH+++ +C F +GS ++T + W T CL+TF P L++L H S++
Sbjct: 351 GHNSYVNCAI-FSTDGSRVITASSDCTVKVWDTKTTDCLQTFKPPPPLRALN-HASYLMV 408
Query: 207 NSSFGG 212
F G
Sbjct: 409 VLHFQG 414
>01_06_1742 - 39585879-39585994,39586089-39586238,39586288-39586375,
39586479-39586640,39586753-39586877,39586992-39587030,
39587290-39587476,39587643-39587713,39589371-39589564,
39589656-39589767,39589899-39590082,39590177-39590503,
39590780-39591061,39591148-39591621,39591730-39591813,
39591850-39591939,39592024-39592247,39592503-39592600,
39592679-39593169,39593249-39593520,39594266-39594522,
39594672-39594890,39595007-39595167,39595249-39595441,
39595528-39595633,39595947-39596121,39596404-39596556,
39596663-39596794,39597120-39597184,39597754-39597819,
39598433-39598511,39598587-39598767,39598864-39598976
Length = 1889
Score = 28.3 bits (60), Expect = 9.2
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 235 DGQWSGEVPICSPIYCPDPLVPEKGRLLIEPSSKHGKYTVGDLMIYDCEDGYDIV 289
D W P+ SPI P+ L R LIE KHG Y VG +C D D V
Sbjct: 1327 DVVWGIFEPLLSPIVTPENLELPPYRELIEWCGKHG-YFVG----INCRDQGDTV 1376
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.137 0.455
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,530,400
Number of Sequences: 37544
Number of extensions: 517333
Number of successful extensions: 802
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 800
Number of HSP's gapped (non-prelim): 8
length of query: 333
length of database: 14,793,348
effective HSP length: 82
effective length of query: 251
effective length of database: 11,714,740
effective search space: 2940399740
effective search space used: 2940399740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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