GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000593-TA|BGIBMGA000593-PA|IPR000436|Sushi/SCR/CCP,
IPR007110|Immunoglobulin-like, IPR013106|Immunoglobulin V-set
         (333 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    27   0.17 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    26   0.40 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    26   0.40 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.70 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.70 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.70 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.70 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.70 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   4.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.5  

>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 276 DLMIYDCED-GYDIVGESSIVCTENGYWSHPPP 307
           D+++Y+  D G+D   ++S+V T NG   + PP
Sbjct: 72  DILMYNSADEGFDGTYQTSVVVTHNGSCLYVPP 104


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 276 DLMIYD-CEDGYDIVGESSIVCTENGYWSHPPP 307
           D+++Y+  ++G+D   ++++V T NG   + PP
Sbjct: 140 DILMYNSADEGFDGTYQTNVVVTHNGSCLYVPP 172


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 276 DLMIYD-CEDGYDIVGESSIVCTENGYWSHPPP 307
           D+++Y+  ++G+D   ++++V T NG   + PP
Sbjct: 140 DILMYNSADEGFDGTYQTNVVVTHNGSCLYVPP 172


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 276 DLMIYD-CEDGYDIVGESSIVCTENGYWSHPPP 307
           D+++Y+  ++G+D   ++S+V T +G   + PP
Sbjct: 72  DILMYNSADEGFDGTYQTSVVVTHDGSCLYVPP 104


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 276 DLMIYD-CEDGYDIVGESSIVCTENGYWSHPPP 307
           D+++Y+  ++G+D   ++S+V T +G   + PP
Sbjct: 72  DILMYNSADEGFDGTYQTSVVVTHDGSCLYVPP 104


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 276 DLMIYD-CEDGYDIVGESSIVCTENGYWSHPPP 307
           D+++Y+  ++G+D   ++S+V T +G   + PP
Sbjct: 72  DILMYNSADEGFDGTYQTSVVVTHDGSCLYVPP 104


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 276 DLMIYD-CEDGYDIVGESSIVCTENGYWSHPPP 307
           D+++Y+  ++G+D   ++S+V T +G   + PP
Sbjct: 72  DILMYNSADEGFDGTYQTSVVVTHDGSCLYVPP 104


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 276 DLMIYD-CEDGYDIVGESSIVCTENGYWSHPPP 307
           D+++Y+  ++G+D   ++S+V T +G   + PP
Sbjct: 72  DILMYNSADEGFDGTYQTSVVVTHDGSCLYVPP 104


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 17  PTSVITNFTGDAPPTIQYAIISGSAVVEPTGELFVFPDSTLRLDC 61
           P +++ N   +A P    A+I+ + +V  TGE+        R  C
Sbjct: 90  PDTILYN---NADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSC 131


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 98  LTLSKMSARHSDTYTC 113
           L+++ ++A HS  YTC
Sbjct: 674 LSITNLAAEHSGDYTC 689


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/33 (27%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 276 DLMIYD-CEDGYDIVGESSIVCTENGYWSHPPP 307
           D+++Y+  ++G+D    +++V   NG   + PP
Sbjct: 109 DVLMYNSADEGFDGTYPTNVVVKNNGTCLYVPP 141


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,720
Number of Sequences: 429
Number of extensions: 5030
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 11
length of query: 333
length of database: 140,377
effective HSP length: 58
effective length of query: 275
effective length of database: 115,495
effective search space: 31761125
effective search space used: 31761125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)