GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000593-TA|BGIBMGA000593-PA|IPR000436|Sushi/SCR/CCP,
IPR007110|Immunoglobulin-like, IPR013106|Immunoglobulin V-set
         (333 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01390.1 68415.m00056 pentatricopeptide (PPR) repeat-containi...    31   1.4  
At2g33600.1 68415.m04118 cinnamoyl-CoA reductase family similar ...    30   2.5  
At5g64930.1 68418.m08167 CPR5 protein, putative Constitutive exp...    28   7.6  

>At2g01390.1 68415.m00056 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 577

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 146 TQGTRLGHSAHFSCQSGFHLNGSAILTCMGNGHWSTSLPTCLETFCPMLKS 196
           T+G  L     +S + G HL  SA L  +GN   S  LP  +E    M+K+
Sbjct: 399 TEGASLAFD--YSLEMGIHLKKSAYLALIGNFLRSNELPKVIEVVKEMVKA 447


>At2g33600.1 68415.m04118 cinnamoyl-CoA reductase family similar to
           cinnamoyl-CoA reductase from Pinus taeda [GI:17978649],
           Eucalyptus gunnii [GI:2058311]
          Length = 321

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 69  NPEWSWTQALGNYETGWSSDEGEKYTHYRLTLSKMSARHSDTYTCATPTG 118
           NP WS +Q L   ET WS  +  K T    +LSK  A  S+ +  A  TG
Sbjct: 135 NPMWSKSQVLD--ETAWSDQDYCKKTENWYSLSKTRA-ESEAFEFAKRTG 181


>At5g64930.1 68418.m08167 CPR5 protein, putative Constitutive
           expressor of Pathogensis Related genes 5 (cpr5);
           regulator of disease resistance and senescence (Plant J.
           (2001)26(4)409-420.
          Length = 564

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 15  CVPTSVITNFTGDAPPTIQYAIISGSAVVEPT-GELFVFPDSTLRLDCVTPRA 66
           C  T +    T  A  T  Y ++ GSA       EL +F + TL+L CV PR+
Sbjct: 214 CSDTELFERETSSA--TSAYEVMQGSATATSLMNELALF-EETLQLSCVPPRS 263


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.137    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,058,861
Number of Sequences: 28952
Number of extensions: 400279
Number of successful extensions: 617
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 616
Number of HSP's gapped (non-prelim): 3
length of query: 333
length of database: 12,070,560
effective HSP length: 81
effective length of query: 252
effective length of database: 9,725,448
effective search space: 2450812896
effective search space used: 2450812896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)