Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000592-TA|BGIBMGA000592-PA|IPR008283|Peptidase M17,
leucyl aminopeptidase, N-terminal, IPR000819|Peptidase M17, leucyl
aminopeptidase, C-terminal, IPR011356|Peptidase M17, leucyl
aminopeptidase
         (452 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   1.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   9.2  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 272 GNSPKFGDVAYSANGKSLHIRLPSREGRLLIADS 305
           G++P   D       K LH RLP R   LL AD+
Sbjct: 92  GSTPDSRDYFSRPFEKRLHSRLPGRNFNLLRADA 125


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 142 NMLNPTSFAKIAVELLCELDINV 164
           N  +PT+  K+   L CE D NV
Sbjct: 37  NYDHPTTLLKLKRYLFCEYDPNV 59


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,854
Number of Sequences: 429
Number of extensions: 5096
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 452
length of database: 140,377
effective HSP length: 60
effective length of query: 392
effective length of database: 114,637
effective search space: 44937704
effective search space used: 44937704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)