GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000592-TA|BGIBMGA000592-PA|IPR008283|Peptidase M17,
leucyl aminopeptidase, N-terminal, IPR000819|Peptidase M17, leucyl
aminopeptidase, C-terminal, IPR011356|Peptidase M17, leucyl
aminopeptidase
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...   192   1e-49
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    30   0.76 
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    27   5.4  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   5.4  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   7.1  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    27   7.1  

>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score =  192 bits (467), Expect = 1e-49
 Identities = 111/331 (33%), Positives = 176/331 (53%), Gaps = 11/331 (3%)

Query: 118 DGWHIGQMKAEAQNLARYLQEMPANMLNPTSFAKIAVELLCELD-INVEVKTQGWAASHE 176
           + + +G ++A AQNLAR L E PAN +    F   A EL      + V V  + W    +
Sbjct: 182 NAFKVGLIEAAAQNLARSLMECPANYMTSLQFCHFAQELFQNSSKVKVFVHDEKWIDEQK 241

Query: 177 MGGFVAIGKSSIQPPLYVEISYYGAGEKTRP---IVLIGKGVTFDSGSLDLKSPKDLRYM 233
           M G + +   S  PP ++E+ Y G  EK++    + L+GKGVTFDSG + +K  ++++ M
Sbjct: 242 MNGLLTVNAGSDIPPRFLEVQYIGK-EKSKDDGWLGLVGKGVTFDSGGISIKPSQNMKEM 300

Query: 234 KGDMAGAGCILAITRTAARLKLPINIRGILPLCELMPNGNSPKFGDVAYSANGKSLHIRL 293
           + DM GA  +L+      +L +P+N   + PL E +P+G++ K GDV +  NG S+ I  
Sbjct: 301 RADMGGAAVMLSSIYALEQLSIPVNAVFVTPLTENLPSGSAAKPGDVIFMRNGLSVEIDN 360

Query: 294 PSREGRLLIADSLVY-ARNYWPKLIIDIGTMSKELIYTLDGSACGCYTNSDELFCYLQSA 352
              EGRL++AD++ Y +  Y  K +I+  T++  ++  L     G +   +EL+  L++A
Sbjct: 361 TDAEGRLILADAVHYVSSQYKTKAVIEASTLTGAMLVALGNVFTGAFVQGEELWKNLETA 420

Query: 353 SSQTGDRIWRMPLWKFYEDRVRDCHTADVANTGRDEFGDSPNCAAFLKQFIC--DTKWVH 410
           S   GD  WRMP  + Y  ++     AD+ N  R   G     AAF+K F+   D  + H
Sbjct: 421 SHDAGDLFWRMPFHEAYLKQLTSSSNADLCNVSR-AGGGCCTAAAFIKCFLAQKDLSFAH 479

Query: 411 LDTYNIAYSKGRDFPYLRRGMTGRPTRTILE 441
           LD   +   +   +     GM+GRP RTI+E
Sbjct: 480 LDIAGVMDKQLNSWDC--DGMSGRPVRTIIE 508


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 263 LPLCELMPNGNSPKFGDVAYSANGKSLHIRLPSREGRLLIADS 305
           LPL +L+P  N     D+++S+NG  ++I    ++G +LI D+
Sbjct: 219 LPLYKLLPKENHSGVTDISWSSNG--MYIAASFKKGGILIWDT 259


>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 328 IYTLDGSACGCYTNSDELFCYLQSASSQTGDRIWRMP 364
           I TL  S    Y  S     Y+  A ++TGD+IW++P
Sbjct: 239 IRTLSFSYDSRYLASGSEDRYVDIADTKTGDQIWKIP 275


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 7   IPKLGESRIFFDLDPTFAFVAVSGLGSECLTYNVS 41
           + KLGE    F L P F+ + + G    CL Y ++
Sbjct: 868 LTKLGEQMSLFPLSPRFSKMLIIGQQHGCLPYVIA 902


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)

Query: 311 NYWPKLIIDIGTMSKELIYTLDGSACGCYTNSD 343
           N  P   + +GT+ + L Y L+G+   CYT +D
Sbjct: 93  NDLPAFFVQLGTVRRLLEYNLEGA---CYTQND 122


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 267 ELMPNGNSPKFGDVAYSANGKSLHIRLPSREGRLLIADSLVYARNYWPKLIIDIGTMSKE 326
           E +P   +P +GD+      K L I+ P    +L  A  L Y   ++   +I IG  S E
Sbjct: 451 EAVPIIRTPSYGDMCAEFLCKKLKIQSPKDVKQLAQAKELAYKECFYQGTMI-IGKYSGE 509

Query: 327 LIYT 330
            + T
Sbjct: 510 KVET 513


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.138    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,664
Number of Sequences: 5004
Number of extensions: 85473
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 148
Number of HSP's gapped (non-prelim): 6
length of query: 452
length of database: 2,362,478
effective HSP length: 75
effective length of query: 377
effective length of database: 1,987,178
effective search space: 749166106
effective search space used: 749166106
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)