GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000592-TA|BGIBMGA000592-PA|IPR008283|Peptidase M17,
leucyl aminopeptidase, N-terminal, IPR000819|Peptidase M17, leucyl
aminopeptidase, C-terminal, IPR011356|Peptidase M17, leucyl
aminopeptidase
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1055 - 33798162-33798290,33798417-33798604,33798707-337987...   157   2e-38
12_02_0137 + 14153603-14153629,14154136-14154586,14155066-141552...   131   1e-30

>02_05_1055 -
           33798162-33798290,33798417-33798604,33798707-33798767,
           33799045-33799122,33799250-33799472,33799599-33799824,
           33799922-33800116,33800210-33800627,33800904-33801182
          Length = 598

 Score =  157 bits (381), Expect = 2e-38
 Identities = 95/317 (29%), Positives = 162/317 (51%), Gaps = 15/317 (4%)

Query: 136 LQEMPANMLNPTSFAKIAVELLCELD--INVEVKTQGWAASHEMGGFVAIGKSSIQPPLY 193
           L   PAN+L P   A+ A  +           +         +MG ++ +  +S  PP +
Sbjct: 287 LVNSPANVLTPAVLAEEASNIASTYSDVFTATILDVEKCKELKMGSYLGVAAASANPPHF 346

Query: 194 VEISYYG-AGEKTRPIVLIGKGVTFDSGSLDLKSPK--DLRYMKGDMAGAGCILAITRTA 250
           + + Y    G   R + ++GKG+TFDSG  ++K+     +  MK DM G+  +    +  
Sbjct: 347 IHLCYKPPGGNAKRKLAIVGKGLTFDSGGYNIKTGPGCSIELMKFDMGGSAAVFGAAKAL 406

Query: 251 ARLKLP-INIRGILPLCELMPNGNSPKFGDVAYSANGKSLHIRLPSREGRLLIADSLVYA 309
            ++K P + +  I+  CE M +G   + GD+  ++NGK++ +     EGRL +AD+LVYA
Sbjct: 407 GQIKPPGVEVHFIVAACENMISGTGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALVYA 466

Query: 310 RNYWPKLIIDIGTMSKELIYTLDGSACGCYTNSDELFCYLQSASSQTGDRIWRMPLWKFY 369
            N     IID+ T++   +  L  S  G +T SDEL   + +AS  +G++ WRMPL + Y
Sbjct: 467 CNQGVDKIIDLATLTGACVVALGPSIAGIFTPSDELAKEVAAASEISGEKFWRMPLEESY 526

Query: 370 EDRVRDCHTADVANTGRDEFGDSPNCAAFLKQFICD-TKWVHLDTYNIAYSKGRDFPYLR 428
            + ++    AD+ NTG  + G S   A FLKQF+ +  +W+H+D     ++        +
Sbjct: 527 WESMKS-GVADMVNTGGRQ-GGSITAALFLKQFVDEKVQWMHIDMAGPVWND------KK 578

Query: 429 RGMTGRPTRTILEFIFQ 445
           R  TG    T++E++ +
Sbjct: 579 RAATGFGVSTLVEWVLK 595


>12_02_0137 +
           14153603-14153629,14154136-14154586,14155066-14155260,
           14155366-14155628,14155964-14156104,14156188-14156283,
           14156672-14156749,14157134-14157194,14157324-14157511,
           14158441-14158569
          Length = 542

 Score =  131 bits (317), Expect = 1e-30
 Identities = 93/335 (27%), Positives = 160/335 (47%), Gaps = 32/335 (9%)

Query: 133 ARYLQEMPANMLNPTSFAKIAVELLCELD--INVEVKTQGWAASHEMGGFVAIGKSSIQP 190
           A+ L   PAN+L P   A+ A  +       +   +  +      +MG ++A+  +S  P
Sbjct: 211 AKELVNSPANVLTPAVLAEEASNIASSYSDVLTATILDEEKCRELKMGSYLAVAAASANP 270

Query: 191 PLYVEISYYGAGEKT-RPIVLIGKGVTFDS-----------------GSLDLK--SPKDL 230
           P ++ + Y   G    R + ++GKG+TFD                  G  ++K  +   +
Sbjct: 271 PHFIHLCYKPPGGNVKRKLAIVGKGLTFDRFYLSLDNLLIVTKFVCIGGYNIKIGAVTTI 330

Query: 231 RYMKGDMAGAGCILAITRTAARLKLP-INIRGILPLCELMPNGNSPKFGDVAYSANGKSL 289
             MK DM G+  +    +   ++K P + +  I   CE M +G   + GD+  ++NGK++
Sbjct: 331 ELMKKDMGGSAALFGAAKALGQIKPPGVEVHFISAACENMISGTGMRPGDIVTASNGKTI 390

Query: 290 HIRLPSREGRLLIADSLVYARNYWPKLIIDIGTMSKELIYTLDGSACGCYTNSDELFCYL 349
            +     EGRL +AD+LVYA       IID+ T++      L  S  G  T SDEL   +
Sbjct: 391 EVDNTDAEGRLTLADALVYACKLGVDKIIDLATLTGYCRIALGPSIAGILTPSDELDKEV 450

Query: 350 QSASSQTGDRIWRMPLWKFYEDRVRDCHTADVANTGRDEFGDSPNCAAFLKQFICD-TKW 408
            +A   +G++ WR+PL + Y ++++    AD+ NTG    G +     FLKQF+ +  KW
Sbjct: 451 AAAYEASGEKFWRLPLEESYWEQMKS-SVADMLNTG-SPLGGAITAGLFLKQFVDEKVKW 508

Query: 409 VHLDTYNIAYSKGRDFPYLRRGMTGRPTRTILEFI 443
           +H+D        G  + Y ++  TG    T++E++
Sbjct: 509 MHVD------MAGPVWNYKKQEATGFGVSTLVEWV 537


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.138    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,362,643
Number of Sequences: 37544
Number of extensions: 584148
Number of successful extensions: 876
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 3
length of query: 452
length of database: 14,793,348
effective HSP length: 84
effective length of query: 368
effective length of database: 11,639,652
effective search space: 4283391936
effective search space used: 4283391936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)