GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000592-TA|BGIBMGA000592-PA|IPR008283|Peptidase M17,
leucyl aminopeptidase, N-terminal, IPR000819|Peptidase M17, leucyl
aminopeptidase, C-terminal, IPR011356|Peptidase M17, leucyl
aminopeptidase
         (452 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5427| Best HMM Match : No HMM Matches (HMM E-Value=.)               87   3e-17
SB_46933| Best HMM Match : Peptidase_M17 (HMM E-Value=0.5)             43   6e-04
SB_57064| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.16 
SB_18601| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.5  
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         29   7.7  

>SB_5427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 87.0 bits (206), Expect = 3e-17
 Identities = 42/106 (39%), Positives = 63/106 (59%)

Query: 219 SGSLDLKSPKDLRYMKGDMAGAGCILAITRTAARLKLPINIRGILPLCELMPNGNSPKFG 278
           SG + LK    +  MK DM GA  + +     A L+LP+N+  + PLCE M  GN+ K G
Sbjct: 245 SGGISLKPSARMSLMKADMGGAAAVCSALVAIATLQLPMNVTVLTPLCENMVAGNANKPG 304

Query: 279 DVAYSANGKSLHIRLPSREGRLLIADSLVYARNYWPKLIIDIGTMS 324
           DV  ++NGK++ +     EGRL++AD+L +A    P  IID+ T++
Sbjct: 305 DVITASNGKTIEVDNTDAEGRLILADALCHANTLSPAAIIDVATLT 350



 Score = 50.0 bits (114), Expect = 4e-06
 Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 20/178 (11%)

Query: 9   KLGESRIFFDLDPTFAFVAVSGLGSECLTYNVSEQ-LDENKEAIRI---AAGVGAISLQP 64
           KLG+S+ F+ +D  +  V   GLG +   ++V E+ ++E +E+  I   AAGV      P
Sbjct: 73  KLGKSKAFYGIDTDYPCVVAVGLGKK--DHSVDEETIEEKEESANIRHAAAGVYRTRNDP 130

Query: 65  LN---PKAIHLE-----SFXXXXXXXXXXXXXXWQFEEYKSTLGKKILPKSQIYLHDDCD 116
                P+  +       S               + F++ KS    K+    +++     D
Sbjct: 131 RTRNYPRTRNNTEESPISTPRNGAAAEGAHLALYSFDKLKSPKKHKLDVNLEMFKRIP-D 189

Query: 117 I----DGWHIGQMKAEAQNLARYLQEMPANMLNPTSFAKIAVELLCELDINVEVKTQG 170
           I    + W  GQ+ A+AQN AR L +MPAN++ P  FA   V L  +   NVE    G
Sbjct: 190 IHRFEEPWSTGQILADAQNFARQLMDMPANLMTPRIFAD-TVGLRLDKLSNVEFNISG 246


>SB_46933| Best HMM Match : Peptidase_M17 (HMM E-Value=0.5)
          Length = 125

 Score = 42.7 bits (96), Expect = 6e-04
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 178 GGFVAIGKSSIQPPLYVEISYYGAGEKTRPIVLIGKGVTFDSGSLDLKS 226
           GG   +GK++  PP    +S+  AG  TR I   GKG+ +D+G L +K+
Sbjct: 77  GGIYGVGKAAANPPALAVLSHTPAGA-TRSIAWCGKGIVYDTGGLSIKT 124


>SB_57064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 4/111 (3%)

Query: 47  NKEAIRIAAGVGAISLQPLNPKAIHLESFXXXXXXXXXXXXXXWQFEEYKSTLG-KKILP 105
           N E++RIA  +  +++  LNP+++ +                 W   E    +   K+ P
Sbjct: 138 NHESVRIAQEITEVNIHKLNPESVRIAQEITEVNIHKLNPEAVWIEHEITEVINILKLNP 197

Query: 106 KSQIYLHDDCDIDGWHIGQMKAEAQNLARYLQEMPANMLNPTSFAKIAVEL 156
           ++    H+  ++   H  +   EA  +A+ + E+  + LNP S  +IA E+
Sbjct: 198 EAVWIEHEITEVINIH--KRNPEAVRIAQEITEVNIHKLNPES-VRIAQEI 245


>SB_18601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 334 SACGCY-TNSDELFCYLQSASSQTG------DRIWRMPLWKFYEDRVRDCHTADVANTGR 386
           S   CY T S+ +FC L S +           RIW+ P   F E+ + +C   DV     
Sbjct: 39  SLSSCYNTQSELMFCGLSSLAVTLNALRIDPQRIWKTPWRWFTEELLDNCRPIDVVREAG 98

Query: 387 DEFGDSPNCAAFLKQFICDT 406
               +  +C A     +C T
Sbjct: 99  GITMEEFSCLAKCNGAVCST 118


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 348 YLQSASSQTGDRIWRMPLWKFYEDRVRDCHTADVANTGRD-EFGDSPNCAAFLKQFICDT 406
           Y Q A  Q       +P+  F+ D+V++C   DVA    D EF D       L   I D 
Sbjct: 171 YNQDAEEQIQRFRKVLPINSFWTDQVKNCKNVDVAFEILDIEFSDKRKIMDELLAVISDH 230

Query: 407 KWVHLD 412
           K V  D
Sbjct: 231 KHVRSD 236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.138    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,811,666
Number of Sequences: 59808
Number of extensions: 604466
Number of successful extensions: 904
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 894
Number of HSP's gapped (non-prelim): 15
length of query: 452
length of database: 16,821,457
effective HSP length: 84
effective length of query: 368
effective length of database: 11,797,585
effective search space: 4341511280
effective search space used: 4341511280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)