GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000592-TA|BGIBMGA000592-PA|IPR008283|Peptidase M17,
leucyl aminopeptidase, N-terminal, IPR000819|Peptidase M17, leucyl
aminopeptidase, C-terminal, IPR011356|Peptidase M17, leucyl
aminopeptidase
         (452 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15313-6|AAA28198.1|  491|Caenorhabditis elegans Leucine aminope...    83   3e-16
Z78018-4|CAB01448.1|  522|Caenorhabditis elegans Hypothetical pr...    58   2e-08
Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical pr...    29   8.9  

>L15313-6|AAA28198.1|  491|Caenorhabditis elegans Leucine
           aminopeptidase protein 1 protein.
          Length = 491

 Score = 83.4 bits (197), Expect = 3e-16
 Identities = 78/304 (25%), Positives = 128/304 (42%), Gaps = 14/304 (4%)

Query: 118 DGWHIGQMKAEAQNLARYLQEMPANMLNPTSFAKIAVELLCELDINVEVKTQGWAASHEM 177
           D   +  +    +  AR + + PAN+L   +    AV++       + V           
Sbjct: 159 DAVFLTDLSESVRETARLI-DTPANILTTDALVDEAVKVGNATGSKITVIRGEELLKAGF 217

Query: 178 GGFVAIGKSSIQPPLYVEISYYGAGEKTRPIVLIGKGVTFDSGSLDLKSPKDLRYMKGDM 237
           GG   +GK+   PP +V +S+   G  T  I L+GKGV +D+G L +K+   +  MK DM
Sbjct: 218 GGIYHVGKAGPTPPAFVVLSHEVPGS-TEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDM 276

Query: 238 AGAGCILAITRTAARLKLPINIRGILPLCE--LMPNGNSPKFGDVAYSANGKSLHIRLPS 295
            GA  +L       +      +   L + E  + P  N P   D+    +GK++ I    
Sbjct: 277 GGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANKP--DDIIKMLSGKTVEINNTD 334

Query: 296 REGRLLIADSLVYAR-NYWPKLIIDIGTMSKELIYTLDGSACG-CYTNSDELFCYLQSAS 353
            EGRL++AD + YA+       I D+ T++    + L G   G   TN ++L   +  A 
Sbjct: 335 AEGRLILADGVFYAKETLKATTIFDMATLTGAQAW-LSGRLHGAAMTNDEQLENEIIKAG 393

Query: 354 SQTGDRIWRMPLWK--FYEDRVRDCHTADVANTGRDEFGDSPNCAAFLKQFIC---DTKW 408
             +GD +  M      F+ D          +N G+ +   S     F+   I      +W
Sbjct: 394 KASGDLVAPMLFAPDLFFGDLKSSIADMKNSNLGKMDGPPSAVAGLFIGAHIGFGEGLRW 453

Query: 409 VHLD 412
           +HLD
Sbjct: 454 LHLD 457


>Z78018-4|CAB01448.1|  522|Caenorhabditis elegans Hypothetical
           protein W07G4.4 protein.
          Length = 522

 Score = 57.6 bits (133), Expect = 2e-08
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 194 VEISYYGAGEKTRPIVLIGKGVTFDSGSLDLKSPKDLRYMKGDMAGAGCILAITRTAARL 253
           + + Y G GE      ++GKGVT D+G  DLK+   +  M  D  G+  +    +    L
Sbjct: 252 IRLEYVGEGETQDTFFVVGKGVTIDTGGCDLKTGGHMFGMCRDKYGSAVVGGFFKAIDVL 311

Query: 254 KLPINIRGILPLCELMPNGNSPKF--GDVAYSANGKSLHIRLPSREGRLLIADSLVYAR 310
           K P NI+ +  +C +  +  S  +   +V  S +GK +HI     EGRL + D L  A+
Sbjct: 312 K-PKNIKAVGYMCMVRNSIGSHAYTCDEVITSRSGKRIHIYNTDAEGRLTMLDPLTLAK 369


>Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical
           protein F25H5.5 protein.
          Length = 725

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 95  YKSTLGKKILPKSQIYLHDDCDIDGWHIGQMKAEAQNLARYLQEMPANMLN 145
           +K   GKK + + +    DD D +  + G+  ++ +N  R   EM  N+LN
Sbjct: 158 FKKKKGKKPVNEEEYKSEDDEDYEPENSGEEDSDEKNNGRADDEMSVNLLN 208


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.138    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,940,365
Number of Sequences: 27539
Number of extensions: 458799
Number of successful extensions: 715
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 3
length of query: 452
length of database: 12,573,161
effective HSP length: 84
effective length of query: 368
effective length of database: 10,259,885
effective search space: 3775637680
effective search space used: 3775637680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)