Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000590-TA|BGIBMGA000590-PA|IPR000762|PTN/MK
heparin-binding protein
         (114 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    26   0.081
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    26   0.081

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
          protein.
          Length = 302

 Score = 26.2 bits (55), Expect = 0.081
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 57 RSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 89
          R+R+   K  D  +C + KT + +C R CR +K
Sbjct: 68 RNRQYVCKAKDEGSCIIDKTHRNQC-RACRLKK 99


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
          protein.
          Length = 406

 Score = 26.2 bits (55), Expect = 0.081
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 57 RSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 89
          R+R+   K  D  +C + KT + +C R CR +K
Sbjct: 68 RNRQYVCKAKDEGSCIIDKTHRNQC-RACRLKK 99


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.125    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,519
Number of Sequences: 317
Number of extensions: 815
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 114
length of database: 114,650
effective HSP length: 49
effective length of query: 65
effective length of database: 99,117
effective search space:  6442605
effective search space used:  6442605
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.1 bits)
S2: 38 (19.4 bits)