Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000590-TA|BGIBMGA000590-PA|IPR000762|PTN/MK
heparin-binding protein
         (114 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    26   1.3  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   3.9  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    23   9.0  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    23   9.0  

>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 55  NIRSRKLTLKKGDPANCEVVKTIQK------KCKRTCRYEKSSWSECSINGEMSRTDKLK 108
           N+RSRK  LK G      ++  +QK      +    C+    + +  S++  +S+ DK++
Sbjct: 166 NVRSRKSALKNGSEEFRRIMILVQKYAIHNDQVSFNCKKVGDTVASLSLSSRLSKADKIR 225


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 48  SECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTC 85
           S+  SK  ++ R++ ++  D ANC   +  +   K TC
Sbjct: 861 SDKSSKEKVKPREIDIRIVDFANCVFAEDKELLAKATC 898


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 71   CEVVKTIQKKCKRTCRY 87
            C ++ T+ + C   CRY
Sbjct: 1963 CVIISTMNRSCDSKCRY 1979


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 77  IQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSD 112
           ++K C     YE    S  +I+ E  +T+ L+   D
Sbjct: 13  LEKVCSALLEYESKRKSSENIDSESKKTNLLEDEQD 48


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.125    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 477,458
Number of Sequences: 5004
Number of extensions: 15405
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 4
length of query: 114
length of database: 2,362,478
effective HSP length: 64
effective length of query: 50
effective length of database: 2,042,222
effective search space: 102111100
effective search space used: 102111100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 48 (23.4 bits)