Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000590-TA|BGIBMGA000590-PA|IPR000762|PTN/MK
heparin-binding protein
         (114 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)                  35   0.014
SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.13 
SB_54349| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.39 
SB_31048| Best HMM Match : zf-CCHC (HMM E-Value=5.5e-05)               30   0.39 
SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                30   0.52 
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)                   30   0.52 
SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   0.69 
SB_4139| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.6  
SB_58283| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_2148| Best HMM Match : WSC (HMM E-Value=0.039)                      27   2.8  
SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)               27   3.7  
SB_8182| Best HMM Match : ATP-synt_E (HMM E-Value=1.8)                 27   3.7  
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)            26   6.4  
SB_31961| Best HMM Match : EGF (HMM E-Value=0)                         26   6.4  
SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)              26   6.4  
SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  
SB_46387| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  
SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)                   26   8.5  

>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
          Length = 429

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 38  EACRYVRGAWSECDSK--TNIRSRKLTLKKGD-PANCEVVKTIQKKCK-RTC-RYEKSSW 92
           E  R+  GAWSEC S   + +R+R ++ K  D   N E      K+C    C  +    W
Sbjct: 53  ECPRWTAGAWSECSSTCGSGVRTRFVSCKPRDGTCNSEDKPDAYKECDVMECPTWSVGQW 112

Query: 93  SECSINGEMSR 103
           S CS+   + R
Sbjct: 113 SSCSVTCGVGR 123


>SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 910

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 11/83 (13%)

Query: 19  WE-ENDHEVLIRSARGAKNREACRYVRGAWSECDS---KTNIRSRKLTLKKG--DPANCE 72
           W+ E+D EVL+R   G+ N   C  VRG   EC     +  +   +  L +G  +   C 
Sbjct: 619 WKLEDDKEVLVR---GSMNECQCVLVRGLMHECQCVLVRGTMNECQCVLVRGTMNECQCV 675

Query: 73  VVKTIQKKCKRTCRYEKSSWSEC 95
           +V+ +  +C+  C   + S +EC
Sbjct: 676 LVRGLMHECQ--CVLVRGSMNEC 696



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 24  HEVLIRSARGAKNREACRYVRGAWSECDS---KTNIRSRKLTLKKG--DPANCEVVKTIQ 78
           HE      RG+ N   C  VRG  +EC     +  +   +  + +G      C +V+ + 
Sbjct: 682 HECQCVLVRGSMNECQCVLVRGTMNECQCVLVRGLMHECQCVVVRGLMHGCQCVLVRGLM 741

Query: 79  KKCKRTCRYEKSSWSEC 95
            +C+  C   + S +EC
Sbjct: 742 HECQ--CVLVRGSMNEC 756


>SB_54349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 971

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 65  KGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTD 105
           K     CEVV+ + K+  RT R+EK S S  ++  E+S +D
Sbjct: 546 KASSDECEVVQVV-KEAIRTGRWEKCSTSIKAVRSELSESD 585


>SB_31048| Best HMM Match : zf-CCHC (HMM E-Value=5.5e-05)
          Length = 601

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 65  KGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTD 105
           K     CEVV+ + K+  RT R+EK S S  ++  E+S +D
Sbjct: 509 KASSDECEVVQVV-KEAIRTGRWEKCSTSIKAVRSELSESD 548


>SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1219

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 19  WEENDHEVLIRSARGAKNREACRYVRGAWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQ 78
           W+E+ H +  R +  AK +    +    ++EC S  N  +      K D  NC    T  
Sbjct: 100 WKESIHSLACRCSAAAKKKGYSFFAIQFYAECWSGPN-TADFAKHGKADDKNCFSELTTD 158

Query: 79  KKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDST 114
            K +  C  +K S  EC    + +   K+K +S S+
Sbjct: 159 VKNRPPC--DKKSEDECVGIDDTNYVYKVKEDSASS 192


>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
          Length = 627

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 68  PANCEVVKTIQKKC-KRTCRYEKSSWSE 94
           P+  +V K + +KC K TCR+ K +WS+
Sbjct: 471 PSGNKVFKCLNQKCGKETCRHCKENWSD 498


>SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 82  KRTCRYEKSSWSECSINGEMSRTDKLKSNSD 112
           K  C YE S  +  +I GEM+  D+ K N D
Sbjct: 729 KHVCAYEISGMTRGTIGGEMTVNDEYKYNDD 759


>SB_4139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%)

Query: 16  GEVWEENDHEVLIRSARGAKNR 37
           G  WEEND E LI  A+GA+NR
Sbjct: 93  GRRWEENDKEGLI--AQGARNR 112


>SB_58283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 417

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 65  KGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTD 105
           K     C VV+ + K+  RT R+EK S S  ++  E+S +D
Sbjct: 40  KASSDECGVVQVV-KEAIRTGRWEKCSTSIKAVRSELSESD 79


>SB_2148| Best HMM Match : WSC (HMM E-Value=0.039)
          Length = 159

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 19  WEENDHEVLIRSARGAKNREACRYVRGAWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQ 78
           W+E+ H +  R +  AK +    +    ++EC S  N  +      K D  NC    T  
Sbjct: 63  WKESIHSLACRCSAAAKKKGYSFFAIQFYAECWSGPN-TADFAKHGKADDKNCFSELTTD 121

Query: 79  KKCKRTCRYEKSSWSEC 95
            K +  C  +K S  EC
Sbjct: 122 VKNRPPC--DKKSEDEC 136


>SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 65  KGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTD 105
           K     CEVV+ + K+  RT  +EK S S  ++  E+S +D
Sbjct: 269 KASSDECEVVQVV-KEAIRTGIWEKCSTSIKAVKSELSESD 308


>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
          Length = 942

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 29  RSARGAKNREACRYVRGAWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYE 88
           ++ RG   ++ C+  + A + C  K    S   T ++G    C++    ++ CK+TC+  
Sbjct: 354 KTLRGDSCKQECKTAKCALT-CKGKGTYGSCDQTCERG---KCQLRCNTRENCKQTCKEG 409

Query: 89  KSSWSEC 95
           K     C
Sbjct: 410 KCLTMSC 416


>SB_8182| Best HMM Match : ATP-synt_E (HMM E-Value=1.8)
          Length = 520

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 34  AKNREACRYVRGAWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWS 93
           A+NRE  R +      C  K NI  R L  +  DP N  +  T++       ++E ++W+
Sbjct: 352 ARNREILRSLFKTIIFC-GKNNIPLRGL--RDSDPTNAALAATLEDISMNRHKHENTNWN 408

Query: 94  ECS 96
             S
Sbjct: 409 PTS 411


>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
          Length = 1148

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 56  IRSRKLTLKKGDPANCEVVKTIQKKCKRTCR 86
           I+S+K T+KK +  N  +  +++K+CK   R
Sbjct: 603 IKSQKETMKKLETENSGLAASLEKECKEVER 633


>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2813

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 33  GAKNREACRYVR-GAWSECDSKTNIRSRKLTLKKGDPANC 71
           G    + CRY    AWS C SK +  S+  T +   P+ C
Sbjct: 663 GGGGGDWCRYWPWSAWSACSSKCSYGSQTRTRQANYPSFC 702


>SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)
          Length = 359

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 30  SARGAKNREACRYVRGAWS--ECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRY 87
           S R  ++   C   R   S  EC S T   S K   +    + CE  +  +   +     
Sbjct: 50  STRECESTRECESTRECESTRECGSTTKCESTKEECES--TSECESTRECESTSECESTT 107

Query: 88  EKSSWSECSINGEMSRTDKLKSNSD 112
           E  S SEC    E + T + +S  +
Sbjct: 108 ECESTSECESTSECASTTECESTRE 132


>SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 47  WSECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCR---YEKSSW 92
           W  C  K  IR+R+  L +G+      ++    + +++CR   Y+  +W
Sbjct: 580 WMNCKLKKLIRARQKALAEGNQDQYRKLRNRVNRERKSCRSKYYDACTW 628


>SB_46387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/52 (28%), Positives = 20/52 (38%)

Query: 41 RYVRGAWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSW 92
          RY  G W      TN +      +K    N E VK + K  K    Y++  W
Sbjct: 21 RYACGGWIRSHPLTNGQVSADRYEKLREENEEFVKGLIKNAKARAEYQQVQW 72


>SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)
          Length = 773

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 47  WSECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCR---YEKSSW 92
           W  C  K  IR+R+  L +G+      ++    + +++CR   Y+  +W
Sbjct: 291 WMNCKLKKLIRARQKALAEGNQDQYRKLRNRVNRERKSCRSKYYDACTW 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.125    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,895,648
Number of Sequences: 59808
Number of extensions: 136653
Number of successful extensions: 253
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 22
length of query: 114
length of database: 16,821,457
effective HSP length: 73
effective length of query: 41
effective length of database: 12,455,473
effective search space: 510674393
effective search space used: 510674393
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)