GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000590-TA|BGIBMGA000590-PA|IPR000762|PTN/MK
heparin-binding protein
         (114 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094...    28   1.5  
01_01_0903 - 7103091-7103120,7104092-7104651,7105208-7105328,710...    27   3.6  
08_01_0345 + 3055522-3055827,3055968-3056022,3056744-3056919,305...    26   8.2  
02_05_0443 - 29057427-29057769,29058086-29058147,29070863-29071132     26   8.2  

>11_06_0711 -
           26508228-26508488,26508970-26509084,26509179-26509451,
           26509629-26510197,26510489-26510597,26511002-26511544,
           26511645-26511763,26511893-26512120,26512199-26512315,
           26512410-26512506,26513169-26513569
          Length = 943

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 51  DSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSN 110
           D + ++R R+L +     A  E ++T++  C +  +    + S CS+ G+M+R + + SN
Sbjct: 249 DERNSLR-RQLWIWIHPSALSEGLETLRAACHQQMQESGDTISCCSLEGKMARLEVMGSN 307

Query: 111 S 111
           +
Sbjct: 308 A 308


>01_01_0903 -
           7103091-7103120,7104092-7104651,7105208-7105328,
           7105545-7106567
          Length = 577

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 54  TNIR--SRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGE 100
           T+IR  +RKL++   D   C    T+  K ++  R   +S + CS  GE
Sbjct: 526 TDIRDATRKLSIYTEDDDGCTTKDTLYMKLEKDLRCTDASINSCSGRGE 574


>08_01_0345 + 3055522-3055827,3055968-3056022,3056744-3056919,
            3057104-3057232,3057313-3057572,3057688-3058001,
            3058268-3058491,3058862-3059214,3059489-3059916,
            3060031-3061514
          Length = 1242

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 16   GEVWEENDHEVLIRSARGAKNREACRYVRG 45
            GEV E   HE L+ ++ G  +R  C   +G
Sbjct: 1210 GEVVEMGSHETLVTTSNGVYSRLYCMQSKG 1239


>02_05_0443 - 29057427-29057769,29058086-29058147,29070863-29071132
          Length = 224

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 28  IRSARGAKNREACRYVRGAWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQKK 80
           +   RG+ N+ A R V        +K +++     L K DP +C +VK + ++
Sbjct: 94  VSGTRGSLNKTAARVVSSL-----TKVHMQFGAWQLSKVDPKSCAIVKDVNQE 141


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.125    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,459
Number of Sequences: 37544
Number of extensions: 107575
Number of successful extensions: 204
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 4
length of query: 114
length of database: 14,793,348
effective HSP length: 73
effective length of query: 41
effective length of database: 12,052,636
effective search space: 494158076
effective search space used: 494158076
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)