SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000590-TA|BGIBMGA000590-PA|IPR000762|PTN/MK
heparin-binding protein
         (114 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52946-1|CAA37121.1|  168|Homo sapiens pleiotrophin protein.           38   0.010
S60110-1|AAB26456.1|  168|Homo sapiens heparin-binding neurite o...    38   0.010
S50409-1|AAB24425.1|  168|Homo sapiens pleiotrophin protein.           38   0.010
M57399-1|AAA35961.1|  168|Homo sapiens nerve growth factor protein.    38   0.010
D90226-1|BAA14261.1|  168|Homo sapiens osf-1 protein.                  38   0.010
CR450338-1|CAG29334.1|  168|Homo sapiens PTN protein.                  38   0.010
BT019692-1|AAV38498.1|  168|Homo sapiens pleiotrophin (heparin b...    38   0.010
BC005916-1|AAH05916.1|  168|Homo sapiens pleiotrophin (heparin b...    38   0.010
DQ323888-1|ABC55425.1|   87|Homo sapiens mutant truncated midkin...    34   0.12 
X55110-1|CAA38908.1|  143|Homo sapiens neurite outgrowth-promoti...    31   1.1  
M94250-1|AAA59850.1|  143|Homo sapiens retinoic acid inducible f...    31   1.1  
M69148-1|AAA58478.1|  143|Homo sapiens midkine protein.                31   1.1  
D10604-1|BAA01457.1|  143|Homo sapiens midkine protein.                31   1.1  
BC047516-1|AAH47516.1|  212|Homo sapiens ZNF668 protein protein.       31   1.1  
BC011704-1|AAH11704.1|  143|Homo sapiens midkine (neurite growth...    31   1.1  
Z48314-1|CAA88307.1| 1042|Homo sapiens apomucin protein.               28   5.9  
BC033831-1|AAH33831.1|  574|Homo sapiens MUC5AC protein protein.       28   5.9  
AJ001403-1|CAA04738.1| 1081|Homo sapiens MUC5AC protein protein.       28   5.9  
AJ001402-1|CAA04737.1| 1081|Homo sapiens MUC5AC protein protein.       28   5.9  
Y13276-1|CAA73725.1|  385|Homo sapiens Tailless protein protein.       28   7.7  
DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated...    28   7.7  
BC028031-1|AAH28031.1|  385|Homo sapiens nuclear receptor subfam...    28   7.7  
BC023144-1|AAH23144.1| 1052|Homo sapiens SWI/SNF related, matrix...    28   7.7  
AL078596-1|CAB75626.1|  385|Homo sapiens nuclear receptor subfam...    28   7.7  
AK131541-1|BAD18677.1|  422|Homo sapiens protein ( Homo sapiens ...    28   7.7  
AK124902-1|BAC85988.1| 1168|Homo sapiens protein ( Homo sapiens ...    28   7.7  
AF411525-1|AAL05871.1|  385|Homo sapiens nuclear receptor subfam...    28   7.7  
AF220532-1|AAG31945.1|  385|Homo sapiens orphan nuclear receptor...    28   7.7  
AB037792-1|BAA92609.1|  395|Homo sapiens KIAA1371 protein protein.     28   7.7  
AB010882-1|BAA25173.1| 1052|Homo sapiens hSNF2H protein.               28   7.7  

>X52946-1|CAA37121.1|  168|Homo sapiens pleiotrophin protein.
          Length = 168

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 40  CRYVRGAWSECDSKTNIRSRKLTLKKG-DPANCEVVKTIQKKC 81
           C+Y   AW ECD  T +++R  +LK+    A C+   TI K C
Sbjct: 99  CKYQFQAWGECDLNTALKTRTGSLKRALHNAECQKTVTISKPC 141



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 71  CEVVKTIQKKCKRTCRYEKSSWSECSINGEM-SRTDKLK 108
           C++    +K+    C+Y+  +W EC +N  + +RT  LK
Sbjct: 85  CKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTGSLK 123


>S60110-1|AAB26456.1|  168|Homo sapiens heparin-binding neurite
           outgrowth promoting factor protein.
          Length = 168

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 40  CRYVRGAWSECDSKTNIRSRKLTLKKG-DPANCEVVKTIQKKC 81
           C+Y   AW ECD  T +++R  +LK+    A C+   TI K C
Sbjct: 99  CKYQFQAWGECDLNTALKTRTGSLKRALHNAECQKTVTISKPC 141



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 71  CEVVKTIQKKCKRTCRYEKSSWSECSINGEM-SRTDKLK 108
           C++    +K+    C+Y+  +W EC +N  + +RT  LK
Sbjct: 85  CKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTGSLK 123


>S50409-1|AAB24425.1|  168|Homo sapiens pleiotrophin protein.
          Length = 168

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 40  CRYVRGAWSECDSKTNIRSRKLTLKKG-DPANCEVVKTIQKKC 81
           C+Y   AW ECD  T +++R  +LK+    A C+   TI K C
Sbjct: 99  CKYQFQAWGECDLNTALKTRTGSLKRALHNAECQKTVTISKPC 141



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 71  CEVVKTIQKKCKRTCRYEKSSWSECSINGEM-SRTDKLK 108
           C++    +K+    C+Y+  +W EC +N  + +RT  LK
Sbjct: 85  CKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTGSLK 123


>M57399-1|AAA35961.1|  168|Homo sapiens nerve growth factor protein.
          Length = 168

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 40  CRYVRGAWSECDSKTNIRSRKLTLKKG-DPANCEVVKTIQKKC 81
           C+Y   AW ECD  T +++R  +LK+    A C+   TI K C
Sbjct: 99  CKYQFQAWGECDLNTALKTRTGSLKRALHNAECQKTVTISKPC 141



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 71  CEVVKTIQKKCKRTCRYEKSSWSECSINGEM-SRTDKLK 108
           C++    +K+    C+Y+  +W EC +N  + +RT  LK
Sbjct: 85  CKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTGSLK 123


>D90226-1|BAA14261.1|  168|Homo sapiens osf-1 protein.
          Length = 168

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 40  CRYVRGAWSECDSKTNIRSRKLTLKKG-DPANCEVVKTIQKKC 81
           C+Y   AW ECD  T +++R  +LK+    A C+   TI K C
Sbjct: 99  CKYQFQAWGECDLNTALKTRTGSLKRALHNAECQKTVTISKPC 141



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 71  CEVVKTIQKKCKRTCRYEKSSWSECSINGEM-SRTDKLK 108
           C++    +K+    C+Y+  +W EC +N  + +RT  LK
Sbjct: 85  CKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTGSLK 123


>CR450338-1|CAG29334.1|  168|Homo sapiens PTN protein.
          Length = 168

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 40  CRYVRGAWSECDSKTNIRSRKLTLKKG-DPANCEVVKTIQKKC 81
           C+Y   AW ECD  T +++R  +LK+    A C+   TI K C
Sbjct: 99  CKYQFQAWGECDLNTALKTRTGSLKRALHNAECQKTVTISKPC 141



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 71  CEVVKTIQKKCKRTCRYEKSSWSECSINGEM-SRTDKLK 108
           C++    +K+    C+Y+  +W EC +N  + +RT  LK
Sbjct: 85  CKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTGSLK 123


>BT019692-1|AAV38498.1|  168|Homo sapiens pleiotrophin (heparin
           binding growth factor 8, neurite growth-promoting factor
            protein.
          Length = 168

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 40  CRYVRGAWSECDSKTNIRSRKLTLKKG-DPANCEVVKTIQKKC 81
           C+Y   AW ECD  T +++R  +LK+    A C+   TI K C
Sbjct: 99  CKYQFQAWGECDLNTALKTRTGSLKRALHNAECQKTVTISKPC 141



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 71  CEVVKTIQKKCKRTCRYEKSSWSECSINGEM-SRTDKLK 108
           C++    +K+    C+Y+  +W EC +N  + +RT  LK
Sbjct: 85  CKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTGSLK 123


>BC005916-1|AAH05916.1|  168|Homo sapiens pleiotrophin (heparin
           binding growth factor 8, neurite growth-promoting factor
            protein.
          Length = 168

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 40  CRYVRGAWSECDSKTNIRSRKLTLKKG-DPANCEVVKTIQKKC 81
           C+Y   AW ECD  T +++R  +LK+    A C+   TI K C
Sbjct: 99  CKYQFQAWGECDLNTALKTRTGSLKRALHNAECQKTVTISKPC 141



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 71  CEVVKTIQKKCKRTCRYEKSSWSECSINGEM-SRTDKLK 108
           C++    +K+    C+Y+  +W EC +N  + +RT  LK
Sbjct: 85  CKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTGSLK 123


>DQ323888-1|ABC55425.1|   87|Homo sapiens mutant truncated midkine
          A protein.
          Length = 87

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 34 AKNREACRYVRGAWSECDSKTNIRSRKLTLKKGD-PANCEVVKTIQKKC 81
          AK +  C+Y    W  CD  T  + R+ TLKK    A C+    + K C
Sbjct: 22 AKKKADCKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC 70


>X55110-1|CAA38908.1|  143|Homo sapiens neurite outgrowth-promoting
           protein protein.
          Length = 143

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 40  CRYVRGAWSECDSKTNIRSRKLTLKKGD-PANCEVVKTIQKKC 81
           C+Y    W  CD  T  + R+ TLKK    A C+    + K C
Sbjct: 84  CKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC 126


>M94250-1|AAA59850.1|  143|Homo sapiens retinoic acid inducible
           factor protein.
          Length = 143

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 40  CRYVRGAWSECDSKTNIRSRKLTLKKGD-PANCEVVKTIQKKC 81
           C+Y    W  CD  T  + R+ TLKK    A C+    + K C
Sbjct: 84  CKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC 126


>M69148-1|AAA58478.1|  143|Homo sapiens midkine protein.
          Length = 143

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 40  CRYVRGAWSECDSKTNIRSRKLTLKKGD-PANCEVVKTIQKKC 81
           C+Y    W  CD  T  + R+ TLKK    A C+    + K C
Sbjct: 84  CKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC 126


>D10604-1|BAA01457.1|  143|Homo sapiens midkine protein.
          Length = 143

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 40  CRYVRGAWSECDSKTNIRSRKLTLKKGD-PANCEVVKTIQKKC 81
           C+Y    W  CD  T  + R+ TLKK    A C+    + K C
Sbjct: 84  CKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC 126


>BC047516-1|AAH47516.1|  212|Homo sapiens ZNF668 protein protein.
          Length = 212

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 28  IRSARGAKNREACRYVRGAWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTC 85
           +R AR AK R      +G W EC S   +RS+  T      ++C  +      C R C
Sbjct: 100 VRLARSAKARPHSSQRKGRWPECTSACRLRSQDAT---NVLSHCRHLNGRSPVCTRRC 154


>BC011704-1|AAH11704.1|  143|Homo sapiens midkine (neurite
           growth-promoting factor 2) protein.
          Length = 143

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 40  CRYVRGAWSECDSKTNIRSRKLTLKKGD-PANCEVVKTIQKKC 81
           C+Y    W  CD  T  + R+ TLKK    A C+    + K C
Sbjct: 84  CKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC 126


>Z48314-1|CAA88307.1| 1042|Homo sapiens apomucin protein.
          Length = 1042

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 66  GDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNS 111
           G P     + T Q+     C  +  SW+ CSING + +   + S+S
Sbjct: 652 GCPEGARAIPTYQEGA--CCPVQNCSWTVCSINGTLYQPGAVVSSS 695


>BC033831-1|AAH33831.1|  574|Homo sapiens MUC5AC protein protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 66  GDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNS 111
           G P     + T Q+     C  +  SW+ CSING + +   + S+S
Sbjct: 276 GCPEGARAIPTYQEGA--CCPVQNCSWTVCSINGTLYQPGAVVSSS 319


>AJ001403-1|CAA04738.1| 1081|Homo sapiens MUC5AC protein protein.
          Length = 1081

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 66  GDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNS 111
           G P     + T Q+     C  +  SW+ CSING + +   + S+S
Sbjct: 783 GCPEGARAIPTYQEGA--CCPVQNCSWTVCSINGTLYQPGAVVSSS 826


>AJ001402-1|CAA04737.1| 1081|Homo sapiens MUC5AC protein protein.
          Length = 1081

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 66  GDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNS 111
           G P     + T Q+     C  +  SW+ CSING + +   + S+S
Sbjct: 783 GCPEGARAIPTYQEGA--CCPVQNCSWTVCSINGTLYQPGAVVSSS 826


>Y13276-1|CAA73725.1|  385|Homo sapiens Tailless protein protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 57 RSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 89
          R+R    K G+   C V KT + +C R CR +K
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQC-RACRLKK 77


>DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated
           protein protein.
          Length = 5005

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/41 (34%), Positives = 17/41 (41%)

Query: 55  NIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSEC 95
           N    K+    G PA C+  +   K   R    EKS W EC
Sbjct: 610 NCHPNKMIHDTGIPAECQSGQKTVKPKWRNVTQEKSGWVEC 650


>BC028031-1|AAH28031.1|  385|Homo sapiens nuclear receptor
          subfamily 2, group E, member 1 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 57 RSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 89
          R+R    K G+   C V KT + +C R CR +K
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQC-RACRLKK 77


>BC023144-1|AAH23144.1| 1052|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 1052

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/51 (23%), Positives = 20/51 (39%)

Query: 17  EVWEENDHEVLIRSARGAKNREACRYVRGAWSECDSKTNIRSRKLTLKKGD 67
           E W  +D E + R   G    E   Y    W  C+   +I      +++G+
Sbjct: 858 EKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGE 908


>AL078596-1|CAB75626.1|  385|Homo sapiens nuclear receptor
          subfamily 2, group E, member 1 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 57 RSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 89
          R+R    K G+   C V KT + +C R CR +K
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQC-RACRLKK 77


>AK131541-1|BAD18677.1|  422|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16774 fis, clone BRCAN2019772, highly  similar
           to Orphan nuclear receptor NR2E1. ).
          Length = 422

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 57  RSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 89
           R+R    K G+   C V KT + +C R CR +K
Sbjct: 83  RNRTYVCKSGNQGGCPVDKTHRNQC-RACRLKK 114


>AK124902-1|BAC85988.1| 1168|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42912 fis, clone BRHIP3024533. ).
          Length = 1168

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/41 (34%), Positives = 17/41 (41%)

Query: 55  NIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSEC 95
           N    K+    G PA C+  +   K   R    EKS W EC
Sbjct: 364 NCHPNKMIHDTGIPAECQSGQKTVKPKWRNVTQEKSGWVEC 404


>AF411525-1|AAL05871.1|  385|Homo sapiens nuclear receptor
          subfamily 2 group E member 1 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 57 RSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 89
          R+R    K G+   C V KT + +C R CR +K
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQC-RACRLKK 77


>AF220532-1|AAG31945.1|  385|Homo sapiens orphan nuclear receptor
          protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 57 RSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 89
          R+R    K G+   C V KT + +C R CR +K
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQC-RACRLKK 77


>AB037792-1|BAA92609.1|  395|Homo sapiens KIAA1371 protein
          protein.
          Length = 395

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/41 (34%), Positives = 17/41 (41%)

Query: 55 NIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSEC 95
          N    K+    G PA C+  +   K   R    EKS W EC
Sbjct: 21 NCHPNKMIHDTGIPAECQSGQKTVKPKWRNVTQEKSGWVEC 61


>AB010882-1|BAA25173.1| 1052|Homo sapiens hSNF2H protein.
          Length = 1052

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/51 (23%), Positives = 20/51 (39%)

Query: 17  EVWEENDHEVLIRSARGAKNREACRYVRGAWSECDSKTNIRSRKLTLKKGD 67
           E W  +D E + R   G    E   Y    W  C+   +I      +++G+
Sbjct: 858 EKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGE 908


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.312    0.125    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,274,086
Number of Sequences: 224733
Number of extensions: 493374
Number of successful extensions: 898
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 868
Number of HSP's gapped (non-prelim): 45
length of query: 114
length of database: 73,234,838
effective HSP length: 80
effective length of query: 34
effective length of database: 55,256,198
effective search space: 1878710732
effective search space used: 1878710732
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 59 (27.9 bits)

- SilkBase 1999-2023 -