GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000590-TA|BGIBMGA000590-PA|IPR000762|PTN/MK
heparin-binding protein
         (114 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   1.6  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   4.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   4.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   8.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 2/18 (11%)

Query: 58  SRKLTLKKGDPA--NCEV 73
           SR +T+KKGD A  +CEV
Sbjct: 814 SRLVTVKKGDTATLHCEV 831


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 2/18 (11%)

Query: 58  SRKLTLKKGDPA--NCEV 73
           SR +T+KKGD A  +CEV
Sbjct: 810 SRLVTVKKGDTATLHCEV 827


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
          carboxykinase protein.
          Length = 118

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 41 RYVRGAWSECDSKTNIRSRKLTL 63
          RY+  A+     KTN+   K TL
Sbjct: 12 RYITAAFPSACGKTNLAMMKPTL 34


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 58  SRKLTLKKGDPANCEVVKTIQKKC 81
           S +LT+K G P N E      ++C
Sbjct: 121 SSRLTIKAGCPMNLENFPMDTQRC 144


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 85  CRYEKSSWSECSINGEMSRTDKLKSNS 111
           C  E SS +  + +G  + TD  KSN+
Sbjct: 351 CAAEPSSDAVSTTSGTTTVTDNEKSNA 377


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.125    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,168
Number of Sequences: 429
Number of extensions: 1232
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 114
length of database: 140,377
effective HSP length: 50
effective length of query: 64
effective length of database: 118,927
effective search space:  7611328
effective search space used:  7611328
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)
S2: 39 (19.8 bits)