GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000590-TA|BGIBMGA000590-PA|IPR000762|PTN/MK
heparin-binding protein
         (114 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62470.1 68416.m07018 pentatricopeptide (PPR) repeat-containi...    29   0.99 
At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type pept...    28   1.3  
At5g48540.1 68418.m06001 33 kDa secretory protein-related contai...    27   3.0  
At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family...    27   3.0  
At1g15940.1 68414.m01913 expressed protein similar To androgen-i...    27   3.0  
At2g22795.1 68415.m02704 expressed protein                             27   4.0  
At5g14820.1 68418.m01738 pentatricopeptide (PPR) repeat-containi...    26   5.3  
At3g62540.1 68416.m07026 pentatricopeptide (PPR) repeat-containi...    26   5.3  
At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi...    26   5.3  
At1g60640.1 68414.m06826 expressed protein                             26   5.3  
At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron...    25   9.2  
At3g15560.1 68416.m01972 expressed protein                             25   9.2  
At2g43490.1 68415.m05404 RabGAP/TBC domain-containing protein si...    25   9.2  
At2g17150.1 68415.m01980 RWP-RK domain-containing protein simila...    25   9.2  

>At3g62470.1 68416.m07018 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 599

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)

Query: 20  EENDHEVLIRSARG-AKNREACRYV 43
           ++N + VLIR   G  K+REACRY+
Sbjct: 507 DDNSYTVLIRGLIGEGKSREACRYL 531


>At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type
           peptidyl-prolyl cis-trans isomerase, putative contains
           Pfam profile: PF00254, FKBP-type peptidyl-prolyl
           cis-trans isomerases
          Length = 694

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 54  TNIRSRKLTLKKGDPANCEVVKTIQKK 80
           T  ++RK TL+ G+PA CE  KT + K
Sbjct: 426 TRSKARKSTLESGEPAKCE--KTFEAK 450


>At5g48540.1 68418.m06001 33 kDa secretory protein-related contains
           Pfam PF01657: Domain of unknown function, duplicated in
           33 KDa secretory proteins
          Length = 263

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 84  TCRYEKSSWSECSINGEMSRTDKLKSNSDS 113
           +CR   S W  C+ N  +S + ++  N DS
Sbjct: 17  SCRAADSIWQLCNTNSNISASSQVSKNIDS 46


>At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family
           protein common family member:At2g33490 [Arabidopsis
           thaliana]
          Length = 608

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 41  RYVRGAWSECDSKTNIRSRKLTLKKGDP 68
           RYV     +CD K N+    L  +KG P
Sbjct: 129 RYVEDMKQQCDGKRNVYEMSLVKEKGRP 156


>At1g15940.1 68414.m01913 expressed protein similar To
           androgen-induced prostate proliferative shutoff
           associated protein (GI:4559410) [Homo sapiens]
          Length = 990

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 17  EVWEENDHEVLIRSARGAKNREACRYVRGAWSECD----SKTNIRSRKLTLKKGDPANCE 72
           +V + N   V+  S+ G     + +  R    E D    S     ++K T+KK +PA  +
Sbjct: 393 KVGQTNQSVVISLSSSGRARTGSRKRSRTKMEETDHDVSSVATQPAKKQTVKKTNPAKED 452

Query: 73  VVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLK 108
           + K+  KK +   +  KSS  E + NG +++T   K
Sbjct: 453 LTKSNVKKHEDGIKTGKSSKKEKADNG-LAKTSAKK 487


>At2g22795.1 68415.m02704 expressed protein
          Length = 734

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 49  ECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 89
           + D K NI   +    KGD A+ EVV   ++K   +   EK
Sbjct: 287 DIDEKANIEEARENNYKGDDASSEVVHESEEKTSESENSEK 327


>At5g14820.1 68418.m01738 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 598

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 20  EENDHEVLIRSARG-AKNREACRYV 43
           ++N + VLIR      K+REACRY+
Sbjct: 506 DDNSYTVLIRGLISEGKSREACRYL 530


>At3g62540.1 68416.m07026 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 599

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 20  EENDHEVLIRSARG-AKNREACRYV 43
           ++N + VLIR      K+REACRY+
Sbjct: 507 DDNSYTVLIRGLISEGKSREACRYL 531


>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 418

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 48  SECDSKTNI-RSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECS 96
           S   +KTN+  SR ++    +  +  +V+ I+K+ K +  +EK+   +CS
Sbjct: 268 SALSTKTNLLNSRIMSSTPSEVQSTGLVEKIRKEAKESQEHEKAYQEDCS 317


>At1g60640.1 68414.m06826 expressed protein
          Length = 340

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 1/98 (1%)

Query: 15  DGEVWEENDHEVLIRSARGAKNREACRYVRGAWS-ECDSKTNIRSRKLTLKKGDPANCEV 73
           +GE  E  D E   +  +   NR A R +R +   E DS T     +     G P+  + 
Sbjct: 195 NGENEEVEDPETPSQEKQIKGNRRARRELRRSQKQEKDSSTKHGENEEVDNSGTPSQGKQ 254

Query: 74  VKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNS 111
           +K   +  ++  R EK      + +GE    D  ++ S
Sbjct: 255 IKENSRARRQRKRLEKQGKGSLTKHGENEEVDNPETPS 292


>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 533

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 20/85 (23%), Positives = 36/85 (42%)

Query: 28  IRSARGAKNREACRYVRGAWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRY 87
           + S  G K ++  +  + A  E ++KT   S+K + KK   A  E  +   KK K+  R 
Sbjct: 448 VDSENGVKEKKDKKKKKKADDEEEAKTEEPSKKKSNKKKTEAEPETAEEPAKKEKKKKRK 507

Query: 88  EKSSWSECSINGEMSRTDKLKSNSD 112
            +   +E     +     K K  ++
Sbjct: 508 HEEEETEMPAKKKEKSEKKKKKKTE 532


>At3g15560.1 68416.m01972 expressed protein
          Length = 471

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/84 (19%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 21  ENDHEVLIRSARGAKNREACRYVRGAWSECDSKTNIRSRKLTLKKGDPANC-EVVKTIQK 79
           +N ++ ++ +    ++RE  + +R    + D +TN  +RK      D     E+   + K
Sbjct: 16  KNPYQAIVAARDSLRHREEAQNMRAEMKKLDDETNDLTRK---NNEDRLTIQELENELVK 72

Query: 80  KCKRTCRYEKSSWSECSINGEMSR 103
           + +R  +  + + S+CS    + +
Sbjct: 73  RRRRAEKCRRLAESQCSYRNTLEK 96


>At2g43490.1 68415.m05404 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 756

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 40  CRYVRGAWSECDSKTNIRSRKLTLKKGDPA 69
           C   R  WS  D  T++     ++KKGD A
Sbjct: 602 CGLTRSLWSRNDRTTHVPCVVSSIKKGDDA 631


>At2g17150.1 68415.m01980 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 909

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 46  AWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECS 96
           +W+ C  +  + SR       D    E V TI   C       KS W  CS
Sbjct: 328 SWAPCARQGKVGSRH-----SDENFSECVSTIDSACSVPDEQSKSFWEACS 373


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.125    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,705
Number of Sequences: 28952
Number of extensions: 89796
Number of successful extensions: 173
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 165
Number of HSP's gapped (non-prelim): 15
length of query: 114
length of database: 12,070,560
effective HSP length: 72
effective length of query: 42
effective length of database: 9,986,016
effective search space: 419412672
effective search space used: 419412672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 53 (25.4 bits)