Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000589-TA|BGIBMGA000589-PA|IPR000727|Target SNARE
coiled-coil region
         (104 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   0.33 
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   0.77 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   2.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   2.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   2.3  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          20   7.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    19   9.5  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 0.33
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 9/75 (12%)

Query: 8   NRNRDNDGTAREPLLGDDSPMNFGNNWTSTPKYTKYSKLANQTDSPNRFDIYDNDILSMQ 67
           ++ R  D T RE         +  NN+       KYS   N  ++ N ++ Y+N+  +  
Sbjct: 296 SKERSRDRTERERSKEPKIISSLSNNY-------KYSNYNNYNNNYNNYNNYNNNYNNNY 348

Query: 68  DKLLGNQN--EQLQV 80
            KL  N N  EQ+ V
Sbjct: 349 KKLYYNINYIEQIPV 363


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
          preprohormone protein.
          Length = 107

 Score = 23.0 bits (47), Expect = 0.77
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 30 FGNNWTSTPKYTKYSKLANQTDSPNRFDIYDNDILSMQDKLLGNQNEQL 78
          + + WT+  + T   +LAN+    +     + ++  ++  L GN N QL
Sbjct: 26 YSHGWTNGKRSTSLEELANRNAIQSDNVFANCELQKLRLLLQGNINNQL 74


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 31  GNNWTSTPKYTKYSKLANQTDSPNRFDIYDNDILSMQD 68
           G+N +++    K +K   QT +    D  DN  +SM++
Sbjct: 149 GSNSSNSDVLFKQNKEEEQTINRKNSDYLDNQEVSMEN 186


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 37  TPKYTKYSKLANQTDSPNRFDIYDNDILS--MQDKLLGNQNEQLQVISETVGSLKTVSKQ 94
           +P++   +K A   +       YD ++    + +K+L NQN    +I   VGS  +V  +
Sbjct: 748 SPEWKDLAKKARSVNHLLTHHEYDYELSRGYIDEKILENQNIITHMILNYVGSEDSVIPR 807

Query: 95  I 95
           I
Sbjct: 808 I 808



 Score = 19.8 bits (39), Expect = 7.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 58  IYDNDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQI 95
           I D D+ + +  +L +   QLQV ++   ++K  S Q+
Sbjct: 120 IVDRDVPTWEVNILKSIVGQLQVDTQGENAVKVNSVQV 157


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
          factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 37 TPKYTKYSKLANQTDSPNRFDIYDNDIL-SMQDKLLGNQN 75
          TP +TK  K+   T+  N   I++ D L ++ DK   N++
Sbjct: 14 TPVFTKQKKVKEDTEL-NLQTIFNEDKLDNLMDKQFKNKS 52


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 19.8 bits (39), Expect = 7.2
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 7  LNRNRDNDGTAREPLLGDD 25
          L +  +ND   + P+ GD+
Sbjct: 15 LKKRNENDPFLKRPITGDE 33


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.4 bits (38), Expect = 9.5
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 31  GNNWTSTPKYTKYSKLANQTDSP 53
           GN+  S+P+Y   +  ++ + SP
Sbjct: 820 GNSPASSPRYLSAAATSSTSTSP 842


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.308    0.127    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,306
Number of Sequences: 429
Number of extensions: 1528
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 104
length of database: 140,377
effective HSP length: 49
effective length of query: 55
effective length of database: 119,356
effective search space:  6564580
effective search space used:  6564580
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (19.9 bits)
S2: 38 (19.4 bits)