GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000589-TA|BGIBMGA000589-PA|IPR000727|Target SNARE
coiled-coil region
         (104 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   2.6  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    21   3.4  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   3.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   3.4  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    20   4.5  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 34  WTSTPKYTKYSKLANQTDSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETVGSLKTVSK 93
           W+S   + K S L +   SP    +Y+  I +    LL +   +  +++E V ++KT  K
Sbjct: 551 WSS---FLKISVLQSLWASPTCDLMYEFQIFTFLMSLLQSIKRRYVLLNEKVEAIKTSPK 607


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
          protein 11 protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 44 SKLANQTDSPNRFDIYDNDILSMQDKLLGN 73
          S LA  +    ++D  D D +   D+LL N
Sbjct: 16 SSLAENSKYTTKYDNVDLDEIIKSDRLLKN 45


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 18  REPLLGDDSPMNFGN 32
           RE +   DSPMN G+
Sbjct: 218 REEVTQKDSPMNMGH 232


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 2   KSKMSLNRNRDNDGTAREPLLGDDSPMNFGNNWTST-PK 39
           K   S N+ +    +A+  ++ DD+ M    + T+T PK
Sbjct: 312 KPSSSSNQEKTTTESAKISVIQDDAQMRLNKHVTTTYPK 350


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
          protein.
          Length = 590

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 7/25 (28%), Positives = 16/25 (64%)

Query: 74 QNEQLQVISETVGSLKTVSKQIGLE 98
          +NE +Q+   ++  L T++  +G+E
Sbjct: 23 KNEDVQLRLNSIKKLSTIALALGVE 47


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.308    0.127    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,668
Number of Sequences: 317
Number of extensions: 1078
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 104
length of database: 114,650
effective HSP length: 49
effective length of query: 55
effective length of database: 99,117
effective search space:  5451435
effective search space used:  5451435
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (19.9 bits)
S2: 38 (19.4 bits)