Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000589-TA|BGIBMGA000589-PA|IPR000727|Target SNARE
coiled-coil region
(104 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 27 0.60
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 0.80
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 0.80
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 26 1.4
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 25 1.8
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 25 1.8
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo... 25 1.8
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 25 1.8
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||... 25 1.8
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 25 1.8
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 25 2.4
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 25 3.2
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 25 3.2
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 25 3.2
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar... 24 4.3
SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr 1|||... 23 7.4
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 23 7.4
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 23 7.4
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 23 9.8
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 23 9.8
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 23 9.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 23 9.8
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 23 9.8
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 27.1 bits (57), Expect = 0.60
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 43 YSKLANQTDSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQI 95
Y L ++ + N I+D + + KLL N+NE L+ +SE + K K +
Sbjct: 13 YDSLKSKISNFN--SIFDRFLQEERKKLLNNKNEYLRQLSEINEAQKKAEKSL 63
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 0.80
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 6 SLNRNRDNDGTAREPLLGDDSPMNFGNNWTSTPKYTKYSKLA--NQTDSPNRFDIYDNDI 63
S + + D+D T+ S GN+ T T + S + N T S + D D
Sbjct: 292 SESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTSVKDEDS 351
Query: 64 LSMQDKLLGNQNEQLQVISETVGSLKT 90
+ DK L ++E + + T S T
Sbjct: 352 SKIHDKSLKRKHEDDESSTSTKSSRTT 378
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 0.80
Identities = 19/65 (29%), Positives = 26/65 (40%)
Query: 3 SKMSLNRNRDNDGTAREPLLGDDSPMNFGNNWTSTPKYTKYSKLANQTDSPNRFDIYDND 62
SK S R A+ P L D+ N GN S+P SK DS + +
Sbjct: 288 SKSSQQPVRTKPRIAQSPFLAQDAKENGGNVEVSSPLSFSASKSPAAVDSSTKTPTEQVN 347
Query: 63 ILSMQ 67
++S Q
Sbjct: 348 VVSKQ 352
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.8 bits (54), Expect = 1.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 57 DIYDNDILSMQDKLLGNQNEQLQVISETVGSL 88
++YDND LS D LL ++ +++SE SL
Sbjct: 535 ELYDNDKLSSIDALLIQDSKLREMVSEKCISL 566
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 1.8
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 57 DIYDNDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIG 96
D+Y + +S+++ LLGN ++Q + GS V + G
Sbjct: 278 DLYRKETISVREALLGNWKRKIQKLD---GSFMEVKRSAG 314
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 25.4 bits (53), Expect = 1.8
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 47 ANQTDSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETV 85
A Q + +RFD N++ SM+ ++ + E +++ ET+
Sbjct: 128 AMQNEMNSRFDAVQNEMTSMKGEMAEMKVEMVEMKRETI 166
>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
Agn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 25.4 bits (53), Expect = 1.8
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 14 DGTAREPLLGDDSPMNFGNNWTSTPKYTKYSKLANQTDSPNRFDIYDNDILSMQDKLLGN 73
D +EPL P+ F +WTS + +A+ S N + D D+ D +G
Sbjct: 144 DSAVKEPLASAGYPIYFVPSWTSLGQGALEESVADGFLSWNAWPTTDADMNDNDD--IGY 201
Query: 74 QN 75
QN
Sbjct: 202 QN 203
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 1.8
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 47 ANQTDSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETV 85
A Q + +RFD N++ SM+ ++ + E +++ ET+
Sbjct: 128 AMQNEMNSRFDTVQNEMTSMKGEMAEMKVEMVEMKRETI 166
>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 225
Score = 25.4 bits (53), Expect = 1.8
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 67 QDKLLGNQNEQLQVISETVGSLKTVSKQIGLELDEQA 103
Q++L Q+ L + +T+G+++ + +G EL +QA
Sbjct: 132 QEQLYQQQDVMLDGVYDTIGNIRGQAALMGEELGQQA 168
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 1.8
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 43 YSKLANQTDSPNRFDIYDNDILSMQDKLLGN---QNEQLQVISETVGSLK 89
Y+ A+ D P+RF+ +DN D N QN Q T+ +K
Sbjct: 17 YNDGASNKDYPDRFNEFDNSQNDHNDYTQNNAQFQNAQTTTFGRTISRVK 66
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 25.0 bits (52), Expect = 2.4
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 10 NRDNDGTAREPLLGDDSPMNFGNNWTSTPKYTKYSKLANQTDSPNRFDIYDNDILSMQDK 69
++DN T P +P N + + YS L + + PN + ++IL Q
Sbjct: 115 SQDNTQTYSTPYT-TMNPSNEMHPYPPATFENNYSVLPDHSSQPNAYSFTGSNILPTQSP 173
Query: 70 LLGNQNEQLQVISETVGSLKTV 91
L NQ + Q + + S T+
Sbjct: 174 SL-NQMQDYQNLQQNGSSNTTI 194
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 24.6 bits (51), Expect = 3.2
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 9 RNRDNDGTAREPLLGDDSPMNFGNNWTSTPKYTKYSKLANQTDSPNRFDI-YDNDILSMQ 67
RN N ++ PL D SP N+ ++ S SPN F DN L
Sbjct: 213 RNPGNISSSSAPLASDQSPTVSSNHIHASGNLALGSNSGLNPRSPNSFSSPLDNPALHTV 272
Query: 68 DKLLGNQNEQLQVISET 84
D N N L +S +
Sbjct: 273 DST--NVNGSLSPLSNS 287
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 24.6 bits (51), Expect = 3.2
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 12 DNDGTAREPLLGDDSPMNFGNNWTSTPKYTK-----YSKLANQTD 51
D+D + PLL S FG+N T + K Y+K A + D
Sbjct: 588 DSDSPKQTPLLTPPSSSGFGDNLLLTARLAKPDMLNYAKRAKKVD 632
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 24.6 bits (51), Expect = 3.2
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 60 DNDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLELDEQAV 104
DN+ S+++KL E+L+ I+E+ G + SK +++ E +
Sbjct: 274 DNEAKSLKEKLENFPVEKLRAIAESYGFKSSDSKATLIKIVESCL 318
>SPAC26H5.09c |||GFO/IDH/MocA family
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 369
Score = 24.2 bits (50), Expect = 4.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 40 YTKYSKLANQTDSPNRFDIYDNDILSMQDKLLGNQNEQLQVIS 82
Y + + A T+S R + + + D+LL + N +L VIS
Sbjct: 33 YAAWERRATSTESKARAAFPNVKVYTKLDELLADSNIELVVIS 75
>SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 117
Score = 23.4 bits (48), Expect = 7.4
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 58 IYDNDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLEL 99
+Y++ D L +E++ ++ V SLK ++ IG E+
Sbjct: 18 LYESQSPQHLDSLENENDERISKLTGKVKSLKELTMNIGTEI 59
>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 23.4 bits (48), Expect = 7.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 40 YTKYSKLANQTDSPNRFDIYDNDILSMQDKLLG 72
+ Y++ A Q SP + +I IL +K+LG
Sbjct: 214 FKDYTQSATQAPSPQQAEIIRPKILKYFEKVLG 246
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 23.4 bits (48), Expect = 7.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 69 KLLGNQNEQLQVISETVGSLKTVSKQ 94
KL N NE+ + +ET G T++KQ
Sbjct: 777 KLSENDNEKAEESNETKGFNTTIAKQ 802
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 23.0 bits (47), Expect = 9.8
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 56 FDIYDNDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLEL 99
F +D+ + + L +Q+Q + + V +KT+ K+ +EL
Sbjct: 74 FVCLQDDLAAATPEELAEMEKQIQELKDEVSVVKTLYKEKCIEL 117
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 23.0 bits (47), Expect = 9.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 40 YTKYSKLANQTDSPNRFDIYDNDILSMQDKLL 71
Y K ++AN+ D I N+IL+M L+
Sbjct: 102 YEKNEEIANENDVDQGMFIQQNNILNMLVNLM 133
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 23.0 bits (47), Expect = 9.8
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 40 YTKYSKLANQTDSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETV 85
Y K K Q +P R +++ + + K+L N + I E++
Sbjct: 91 YMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESM 136
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 23.0 bits (47), Expect = 9.8
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 44 SKLANQTDSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLELDE 101
+KL NQ D N+ D+L ++ L+ + E L + SL ++ LD+
Sbjct: 1393 NKLKNQLDHLNQEIRLKEDVLKEKESLIISLEESLSNQRQKESSLLDAKNELEHMLDD 1450
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 23.0 bits (47), Expect = 9.8
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 43 YSKLANQTDSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETV 85
+SKL +++ + R D+D + +LL +N Q +E V
Sbjct: 5 FSKLFSKSPTSGRVPSPDSDYSEEEQRLLAEENGYFQDSNEYV 47
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.127 0.350
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 519,847
Number of Sequences: 5004
Number of extensions: 21923
Number of successful extensions: 57
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 25
length of query: 104
length of database: 2,362,478
effective HSP length: 63
effective length of query: 41
effective length of database: 2,047,226
effective search space: 83936266
effective search space used: 83936266
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 47 (23.0 bits)
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