Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000589-TA|BGIBMGA000589-PA|IPR000727|Target SNARE
coiled-coil region
(104 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0146 - 1161005-1161133,1161239-1161283,1161369-1161469,116... 30 0.39
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 29 0.52
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 28 1.2
02_01_0142 - 1022387-1022518,1022627-1022671,1022750-1022850,102... 28 1.2
09_04_0298 + 16475693-16475849,16476148-16476265,16476364-164764... 28 1.6
09_02_0025 + 3088084-3088319,3089582-3089627,3089720-3090475 27 2.8
08_01_1056 + 10752363-10752503,10752711-10752771,10753483-107536... 27 2.8
01_07_0278 - 42440405-42440515,42440765-42440830,42440995-424410... 27 2.8
04_03_0423 + 15766965-15767612,15781082-15782299 27 3.7
04_03_0414 + 15633517-15634164,15647700-15648917 27 3.7
10_08_0328 - 16805296-16806121,16806493-16807274 26 4.9
07_03_0489 - 18686806-18687681,18687816-18687830 26 4.9
01_01_0560 + 4117203-4117458,4119359-4119609,4119691-4119860,412... 26 4.9
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 26 6.4
07_03_0724 + 20975942-20976867,20977397-20977476,20977976-209783... 25 8.5
05_07_0010 - 27024013-27024171,27024286-27024699,27025389-270254... 25 8.5
04_03_0232 - 13049649-13052807 25 8.5
03_01_0389 + 3021849-3022136,3022237-3022753,3022835-3022988,302... 25 8.5
01_06_1326 - 36318942-36319037,36319126-36319135,36319298-363193... 25 8.5
>03_01_0146 -
1161005-1161133,1161239-1161283,1161369-1161469,
1161585-1161691,1161823-1161924,1162028-1162250,
1162343-1162382
Length = 248
Score = 29.9 bits (64), Expect = 0.39
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 39 KYTKYSKLANQTDSPNRFDI-----YDN-DILSMQDKLLGNQNEQLQVISETVGSLKTVS 92
+++ S L D+ + D+ DN +I+ +Q ++ Q+++L + ET+ S K ++
Sbjct: 118 RFSNRSDLLGPDDNHAKIDVSSIANMDNREIIELQRNVIKEQDDELDKLEETIVSTKHIA 177
Query: 93 KQIGLELD 100
I ELD
Sbjct: 178 LAINEELD 185
>01_01_0568 -
4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 29.5 bits (63), Expect = 0.52
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 37 TPKYTKYSKLANQTDSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIG 96
T ++ SKL+ + D NR + D++ KL NE + ++ +G +++VSK +
Sbjct: 515 TDSRSEVSKLSVELDEANRMN---QDLVLQISKLQDEFNEMQEGLTNKLGEVESVSKALS 571
Query: 97 LEL 99
EL
Sbjct: 572 DEL 574
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 45 KLANQTDSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLEL 99
K+ N ++ NR I + +++ KL N QV++ + + VSK + EL
Sbjct: 450 KVFNLSEELNRVKISNQQLITQITKLTDESNIAKQVLTNKIAEAEAVSKVLSDEL 504
>02_01_0142 -
1022387-1022518,1022627-1022671,1022750-1022850,
1023102-1023205,1023352-1023453,1024190-1024404
Length = 232
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 51 DSPNRFDIYDND-ILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLEL 99
D +R DN I+S+Q +++ Q+E L+ + ETV S K ++ + EL
Sbjct: 118 DDMSRVAGLDNQGIVSLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEEL 167
>09_04_0298 +
16475693-16475849,16476148-16476265,16476364-16476467,
16478794-16478808,16479276-16479481,16479567-16479719,
16479842-16480123
Length = 344
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 69 KLLGNQNEQLQVISETVGSLKTVSKQIGLELDE 101
K++ + EQLQ I E V SL I +E DE
Sbjct: 295 KIMSSMPEQLQSIDEIVNSLPEADDDIDIEDDE 327
>09_02_0025 + 3088084-3088319,3089582-3089627,3089720-3090475
Length = 345
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 25 DSPMNFGNNWTSTPKYTKYSKLANQTDSPNRFDIYDNDILSMQDK 69
D P F + W K K+ Q D N+ ND++ + D+
Sbjct: 187 DGPFLFMHCWNELKKQPKWHAYLEQLDKSNKRKADYNDVIPLDDE 231
>08_01_1056 +
10752363-10752503,10752711-10752771,10753483-10753620,
10754667-10754883,10755760-10755861,10756030-10756133,
10756383-10756483,10756563-10756607,10756724-10756855
Length = 346
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 51 DSPNRFDIYDND-ILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLEL 99
D +R DN I+ +Q +++ Q+E L+ + ETV S K ++ + EL
Sbjct: 232 DDMSRVAGLDNQGIVGLQRQIMKEQDEGLEKLEETVLSTKHIALAVNEEL 281
>01_07_0278 -
42440405-42440515,42440765-42440830,42440995-42441085,
42441342-42441496,42441823-42442044,42442097-42442210,
42442833-42442912,42443289-42443505
Length = 351
Score = 27.1 bits (57), Expect = 2.8
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 4 KMSLNRNRDNDGTAREPLLGDDSPMNFGNNWTSTPKYTKYSKLANQTDSPNRFDIYDND- 62
++ L+R R+ G+AR + + G S ++ + + T N + DND
Sbjct: 195 EVELSRRRNWIGSARNQVAAVRRSVEKGK---SNSTFSAHQDMG--TSRSNHYTAQDNDD 249
Query: 63 -ILSMQDK---LLGNQNEQLQVISETVGSLKTVSKQIGLELDEQ 102
I S D+ L+ Q+E+L +SE+V + V I EL Q
Sbjct: 250 FIASESDRQLLLMRQQDEELDELSESVQRIGGVGLTIHEELSGQ 293
>04_03_0423 + 15766965-15767612,15781082-15782299
Length = 621
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 36 STPKYTKYSKLANQTDSPNRFDIYDNDILSMQ-DKLLGNQNEQLQVISETV 85
S+P K + L N+ P D+++ +I+ + DKL ++L+ + +V
Sbjct: 7 SSPSTGKSTDLQNKPPYPTGVDVHEGNIIPISLDKLSAEHRQELEQMMSSV 57
>04_03_0414 + 15633517-15634164,15647700-15648917
Length = 621
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 36 STPKYTKYSKLANQTDSPNRFDIYDNDILSMQ-DKLLGNQNEQLQVISETV 85
S+P K + L N+ P D+++ +I+ + DKL ++L+ + +V
Sbjct: 7 SSPSTGKSTDLQNKPPYPTGVDVHEGNIIPISLDKLSAEHRQELEQMMSSV 57
>10_08_0328 - 16805296-16806121,16806493-16807274
Length = 535
Score = 26.2 bits (55), Expect = 4.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 29 NFGNNWTSTPKYTKYSKL 46
+ GNNW + P Y K+S +
Sbjct: 172 DLGNNWLTNPDYRKFSTM 189
>07_03_0489 - 18686806-18687681,18687816-18687830
Length = 296
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 8 NRNRDNDGTAREPLLGDDSPMNFGNNWTSTPKYTKYSK 45
+ N D DG EP+ DD + G W T ++ K+ +
Sbjct: 249 DNNSDGDGEI-EPVTDDDDIDDVGQQWCPTWEHRKFEQ 285
>01_01_0560 +
4117203-4117458,4119359-4119609,4119691-4119860,
4120188-4120385,4120922-4121081
Length = 344
Score = 26.2 bits (55), Expect = 4.9
Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 6 SLNRNRDNDGTAREPLLGDDSPMN------FGNNWTSTPKYTKYSKLANQTDSPNRFDIY 59
S N N + PL+ D P + + ++ +TP + + + S + +
Sbjct: 184 SAANNASNPFVRQRPLVTRDGPESSVPPAPWASDSATTPLFQRKKTNGDHGASSSSSQPF 243
Query: 60 DNDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLELDEQ 102
L QD + ++ E LQ + T+ L + Q+ + +Q
Sbjct: 244 MQQQLVQQDSYMQSRAEALQNVESTIHELSNIFTQLATMVSQQ 286
>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
Length = 427
Score = 25.8 bits (54), Expect = 6.4
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 3 SKMSLNRNRDNDGTAREPLLGDDSPMNFGNNWTSTPKYTKYSKLANQTDSPNRFDIYDND 62
S + L+++ DN+ +D+ N NN S+ + ++ D YDN
Sbjct: 174 SWLLLSKDSDNNNNNNN---NNDNDNNDNNNSNSSNNGMYFGEVDEYFDLVGYNSYYDNR 230
Query: 63 ILSMQDKLLGNQNEQLQ 79
I + QD+ G +Q Q
Sbjct: 231 IENNQDRQYGMHEQQEQ 247
>07_03_0724 +
20975942-20976867,20977397-20977476,20977976-20978370,
20988410-20989444
Length = 811
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 56 FDIYDNDILSMQDKLLGNQNEQLQVISETVGSLKTV-SKQIGLELDEQAV 104
F++ NDI + L + + ++ TVGS+K K+ L+ D Q +
Sbjct: 202 FNVDPNDIFKLSIWFLQDYDTDNWILKHTVGSMKLFGGKKYQLDYDYQVI 251
>05_07_0010 -
27024013-27024171,27024286-27024699,27025389-27025445,
27025544-27025637,27025775-27025868,27025949-27026117,
27026450-27026554,27026665-27026784,27027190-27027735
Length = 585
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 36 STPKYTKYSKLANQTDSPNRFDIYDNDILSMQ 67
S P T S + Q + P+RFDIY ++ +Q
Sbjct: 363 SAPVATALSPVLWQLNLPDRFDIYSLGLIFLQ 394
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 52 SPNRFDIYDNDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLELDEQA 103
S RF ++ NDI + ++ L N + + L +V + +E +E A
Sbjct: 152 SRGRFSLHSNDIREVHERKLAESNVSIYADLSSDSILNSVRHLLQVEAEEVA 203
>03_01_0389 +
3021849-3022136,3022237-3022753,3022835-3022988,
3023076-3023166,3024556-3024627,3026366-3026689
Length = 481
Score = 25.4 bits (53), Expect = 8.5
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 7 LNRNRDNDGTAREPLL-GDDSPMNFGNNWTSTPKYTKYSKLAN-QTDSPNRFDIYDNDIL 64
L R+ D+ G PL+ G + NN + S + Q D + + ++ +L
Sbjct: 330 LRRHMDDQGWVPLPLIAGFNQVKKLTNNVQFILETVLQSTVVEVQGDKLRKRERWEIWLL 389
Query: 65 SMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLE 98
Q GN + L ++ + SL + + +GLE
Sbjct: 390 PKQGYSAGNSSGSLSPVTSNIDSLASQFQSVGLE 423
>01_06_1326 -
36318942-36319037,36319126-36319135,36319298-36319368,
36319594-36319679,36320217-36320295,36320401-36320493,
36320656-36320678,36320829-36320956,36321182-36321278,
36321394-36321646,36321744-36321887,36335560-36335811
Length = 443
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 39 KYTKYSKLANQTDSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETVGSLKTV 91
K+T ++ + T++P+ F + +LS D+L G + ++S+ +G + +
Sbjct: 175 KFTAHTTVREDTEAPSTFPSHAYKVLSF-DELRGRAYRK-DILSDAIGIMTAI 225
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.308 0.127 0.350
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,967,698
Number of Sequences: 37544
Number of extensions: 114388
Number of successful extensions: 195
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 186
Number of HSP's gapped (non-prelim): 19
length of query: 104
length of database: 14,793,348
effective HSP length: 72
effective length of query: 32
effective length of database: 12,090,180
effective search space: 386885760
effective search space used: 386885760
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 53 (25.4 bits)
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