Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000589-TA|BGIBMGA000589-PA|IPR000727|Target SNARE
coiled-coil region
(104 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20526| Best HMM Match : SNARE (HMM E-Value=8.1e-11) 47 3e-06
SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.2
SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32) 28 1.6
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06) 27 2.2
SB_14732| Best HMM Match : SAM_1 (HMM E-Value=5.2e-17) 27 2.9
SB_51811| Best HMM Match : Vicilin_N (HMM E-Value=1.9) 27 2.9
SB_18340| Best HMM Match : Vicilin_N (HMM E-Value=1.5) 27 2.9
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.8
SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21) 27 3.8
SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59) 26 5.0
SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59) 26 5.0
SB_9500| Best HMM Match : Saccharop_dh_N (HMM E-Value=1.8) 26 5.0
SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.0
SB_47745| Best HMM Match : SURF6 (HMM E-Value=1.1) 26 6.7
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.7
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.7
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.7
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032) 26 6.7
SB_16475| Best HMM Match : Vicilin_N (HMM E-Value=1.6) 26 6.7
SB_16008| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=6.6e-09) 26 6.7
SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.8
SB_51050| Best HMM Match : DUF1168 (HMM E-Value=1) 25 8.8
SB_5515| Best HMM Match : PspA_IM30 (HMM E-Value=0.14) 25 8.8
>SB_20526| Best HMM Match : SNARE (HMM E-Value=8.1e-11)
Length = 245
Score = 47.2 bits (107), Expect = 3e-06
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 42 KYSKLANQTDSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLELDE 101
KYS+L + + N+ I D Q L+ Q+EQL+++ +VG LKT+ ++IG E+DE
Sbjct: 129 KYSRLDREIERSNQTFIDDQQ--QQQSLLMQQQDEQLEMVGHSVGVLKTMGRKIGDEVDE 186
Query: 102 QAV 104
Q V
Sbjct: 187 QNV 189
>SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 8 NRNRDNDGTAREPLLGDDSPMNFGNNWTSTPKYTKYSKLANQTDSPNRFDIYDNDILSMQ 67
N N DN+ T+ D++ ++ NN + + + +++ +S N DN+ +S
Sbjct: 161 NNNSDNNNTSDNNNTSDNNNISDNNNTSDNNNTSDNNNISDNNNSDNNNS--DNNNISDN 218
Query: 68 DKLLGNQN 75
+ ++ N N
Sbjct: 219 NNIIDNNN 226
>SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32)
Length = 773
Score = 27.9 bits (59), Expect = 1.6
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 11 RDNDGTAREPLLGDDSPMNFGNNWTSTPK---YTKYSKLANQTDSPNRFDIYDNDILSMQ 67
+DN + D S + W + K YT++ K A D + + D+ +
Sbjct: 640 KDNQSVIQSKPNIDYSEITTVEEWLGSIKMGQYTEHFKQAGYRDLQTIAESEEPDLDGLG 699
Query: 68 DKLLGNQNEQLQVISETVGSLK 89
KL+G++N+ + I E G LK
Sbjct: 700 VKLIGHKNKIRKSIREVKGKLK 721
>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
Length = 1292
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 46 LANQTDS-PNRFDIYDNDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLELD 100
L N+ S + DI +++ S + ++ N E L+V SETV L ++++ ELD
Sbjct: 597 LTNEVTSLQKQIDILEDNSQS-ESSMVENLKENLKVKSETVMQLNRDNEEVRAELD 651
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 62 DILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLELDEQ 102
D+LS +D+ + + N++LQ + E L+ K G EL EQ
Sbjct: 743 DVLSSRDESVRDLNQELQNMKEEHERLQNEMKLQGEELTEQ 783
>SB_14732| Best HMM Match : SAM_1 (HMM E-Value=5.2e-17)
Length = 87
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 39 KYTKYSKLANQTDSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETVGSLK 89
+YT++ K A D + + D+ + KL+G++N+ + I E G LK
Sbjct: 30 QYTEHFKQAGYRDLQTIAESEEPDLDGLGVKLIGHKNKIRKSIREVKGKLK 80
>SB_51811| Best HMM Match : Vicilin_N (HMM E-Value=1.9)
Length = 406
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 29 NFGNNWTSTPKYTKYSKLANQT---DSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETV 85
+F N+W K+ N D FD D++IL + ++LG ++ L +I +
Sbjct: 240 HFPNDWKIARLINMDRKMFNLVVLLDLKKAFDTVDHEILLRKMQILGISHDALYLIKSYL 299
Query: 86 GSLKTVSKQI 95
K V +++
Sbjct: 300 SGRKQVCQEL 309
>SB_18340| Best HMM Match : Vicilin_N (HMM E-Value=1.5)
Length = 406
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 29 NFGNNWTSTPKYTKYSKLANQT---DSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETV 85
+F N+W K+ N D FD D++IL + ++LG ++ L +I +
Sbjct: 240 HFPNDWKIARLINMDRKMFNLVVLLDLKKAFDTVDHEILLRKMQILGISHDALYLIKSYL 299
Query: 86 GSLKTVSKQI 95
K V +++
Sbjct: 300 SGRKQVCQEL 309
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 37 TPKYTKYSKLANQTDSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETVGSL-KTVSKQI 95
T + +Y K ++ D D DIL + + + NQ E+ I E + VSK +
Sbjct: 2070 TQRMHRYEKTLSELDMSEEADRQQRDILQEKIEYVKNQYEEACKIKEVNDKRGEVVSKFL 2129
Query: 96 GLELDEQ 102
LDE+
Sbjct: 2130 ESYLDEE 2136
>SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)
Length = 1049
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 52 SPNRFDIYDNDILSMQDKLLGNQNEQ 77
SPN FD++ +L Q++LL E+
Sbjct: 611 SPNEFDLFKQQVLHEQERLLYTLQEE 636
>SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59)
Length = 752
Score = 26.2 bits (55), Expect = 5.0
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 10 NRDNDGTAREPLLG---DDSPM----NFGNNWTSTPKYTKYSKLANQTDSPNRFD-IYDN 61
N D G R +G +D P+ +FG+N + K+ + S + DSP ++
Sbjct: 458 NTDEHGKFRIERVGQYFEDKPLTVLSSFGDN--AFAKFVEGSTVLK--DSPYMVSHSMEH 513
Query: 62 DILSMQDKLLGNQNEQLQVISETVG 86
+LS+ L+GN N + +SE +G
Sbjct: 514 SLLSLAKALVGNVNHTFKHVSEVIG 538
>SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59)
Length = 752
Score = 26.2 bits (55), Expect = 5.0
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 10 NRDNDGTAREPLLG---DDSPM----NFGNNWTSTPKYTKYSKLANQTDSPNRFD-IYDN 61
N D G R +G +D P+ +FG+N + K+ + S + DSP ++
Sbjct: 458 NTDEHGKFRIERVGQYFEDKPLTVLSSFGDN--AFAKFVEGSTVLK--DSPYMVSHSMEH 513
Query: 62 DILSMQDKLLGNQNEQLQVISETVG 86
+LS+ L+GN N + +SE +G
Sbjct: 514 SLLSLAKALVGNVNHTFKHVSEVIG 538
>SB_9500| Best HMM Match : Saccharop_dh_N (HMM E-Value=1.8)
Length = 109
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 51 DSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQ 94
D FD D++IL + ++LG ++ L +I + K V +Q
Sbjct: 13 DLKKAFDTVDHEILLRKMQILGISHDALSLIKSYLSGRKQVCQQ 56
>SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 20 PLLGDDSPMNFGNNWTSTP-KYTKY--SKLANQTDSPNR 55
P L ++SP N NW P +T++ SK A + SP R
Sbjct: 364 PTLMENSPQNLHFNWDLNPTDHTQFVPSKAAAKPSSPTR 402
>SB_47745| Best HMM Match : SURF6 (HMM E-Value=1.1)
Length = 223
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 62 DILSMQDKLLGNQNEQLQVISETVGS-LKTVSKQIGL 97
DIL L Q E+LQ + E VG+ + T+ + GL
Sbjct: 152 DILDRHSDRLQEQEEKLQAVLEKVGNIMDTIQDEQGL 188
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 25.8 bits (54), Expect = 6.7
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 42 KYSKLAN----QTDSPNRFDIYDNDIL-SMQDKLLGNQNEQLQVISETVGSLKTVSKQI 95
+Y KLA D +R D Y + +L + +D LL N+ + LQ + + +KT++K++
Sbjct: 6164 QYYKLAEFKVAMKDCIDRIDEYRSSVLQAREDGLLDNE-DSLQELHADLQFVKTIAKEV 6221
>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1535
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 25 DSPMNFGNNWTSTPK--YTKYSKLANQTDSPNRFDIYDND 62
+SP+N N+ +S ++K S + +D + D YD+D
Sbjct: 397 NSPLNLPNSLSSVSSSLFSKASSFCSDSDDSDEEDSYDDD 436
>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2916
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 61 NDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLELDE 101
+DI + ++L+ ++ ++ +E + SLK +Q+G E DE
Sbjct: 255 SDITYLHEQLVAQESHMAEMSNE-INSLKEELQQLGAERDE 294
>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
Length = 1293
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 61 NDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLELDE 101
+DI + ++L+ ++ ++ +E + SLK +Q+G E DE
Sbjct: 203 SDITYLHEQLVAQESHMAEMSNE-INSLKEELQQLGAERDE 242
>SB_16475| Best HMM Match : Vicilin_N (HMM E-Value=1.6)
Length = 153
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 51 DSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQI 95
D FD D++IL + ++LG ++ L +I + K V +++
Sbjct: 13 DLKKAFDTVDHEILLRKMQILGISHDALSLIKSYLSGRKQVCQEL 57
>SB_16008| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=6.6e-09)
Length = 314
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 76 EQLQVISETVGSLKTVSKQIGLELD 100
++LQVI+E + LK V IGL ++
Sbjct: 104 QELQVITELMKELKNVKSTIGLRIN 128
>SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1263
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 8 NRNRDNDGTAREPLLGDDSPMNFGNNWTSTPKYTKYSKLANQTDSPNRFDIYDNDILSMQ 67
N N+ N+ + DD+ N GN ++ + Y+ + D N I +N I + Q
Sbjct: 160 NNNKSNNNDDDKNNSKDDNNNNNGNKNSNNNSDSDYNNNKDNNDDENSNSIDENSINNSQ 219
Query: 68 DKLLGNQNEQL 78
N N+++
Sbjct: 220 G--CNNNNDKV 228
>SB_51050| Best HMM Match : DUF1168 (HMM E-Value=1)
Length = 140
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 51 DSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQI 95
D FD D++IL + ++LG ++ L +I+ + K V +++
Sbjct: 13 DLKKAFDTVDHEILLRKMQILGISHDALSLINYFLSGRKQVCQEL 57
>SB_5515| Best HMM Match : PspA_IM30 (HMM E-Value=0.14)
Length = 388
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 54 NRFDIYDNDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGL 97
N DN I S+QD+L +NE+ ++ E G+ K+ G+
Sbjct: 160 NELKAKDNRIESLQDELERMENEKTELRVELRGAEKSTEATKGM 203
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.308 0.127 0.350
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,643,510
Number of Sequences: 59808
Number of extensions: 155448
Number of successful extensions: 317
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 26
length of query: 104
length of database: 16,821,457
effective HSP length: 72
effective length of query: 32
effective length of database: 12,515,281
effective search space: 400488992
effective search space used: 400488992
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 53 (25.4 bits)
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