GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000589-TA|BGIBMGA000589-PA|IPR000727|Target SNARE
coiled-coil region
         (104 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ459779-1|CAD30839.1|  405|Anopheles gambiae clip-domain serine...    23   3.0  
AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin bi...    23   3.0  
AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin b...    23   3.0  
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           23   3.0  
AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.            21   9.2  

>AJ459779-1|CAD30839.1|  405|Anopheles gambiae clip-domain serine
           protease protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 31  GNNWTSTPKYTKYSKLANQTDSPNRFDIYDNDILSMQDKLL 71
           G N+  T    K+ +L       N   +Y+ND+    D ++
Sbjct: 186 GKNFQQTKGRLKFVRLREYNIHTNPDCVYENDLKDCSDDMI 226


>AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 19  EPLLGDDSPM--NFGNNWTSTPKYTKYSKLANQTDSPNR 55
           EP+  D S +  NF      TP  +  S+L NQT S +R
Sbjct: 133 EPVRFDPSVLRRNFALKTAQTPDPSFQSQLMNQTSSFHR 171


>AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 568

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 19  EPLLGDDSPM--NFGNNWTSTPKYTKYSKLANQTDSPNR 55
           EP+  D S +  NF      TP  +  S+L NQT S +R
Sbjct: 138 EPVRFDPSVLRRNFALKTAQTPDPSFQSQLMNQTSSFHR 176


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 58  IYDNDILSMQDKLLGNQNEQLQVI 81
           I+DN+I  + DK L   NE LQ++
Sbjct: 276 IHDNEISMVGDKALSGLNE-LQIL 298


>AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.
          Length = 722

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)

Query: 51  DSPNRFDIYDNDILSMQD 68
           D   +F+I ++D+LS+QD
Sbjct: 700 DEIYKFEIENDDMLSIQD 717


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.308    0.127    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,627
Number of Sequences: 2123
Number of extensions: 3932
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 104
length of database: 516,269
effective HSP length: 55
effective length of query: 49
effective length of database: 399,504
effective search space: 19575696
effective search space used: 19575696
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 42 (21.0 bits)