Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000589-TA|BGIBMGA000589-PA|IPR000727|Target SNARE
coiled-coil region
(104 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79590.1 68414.m09280 syntaxin 52 (SYP52) identical to Swiss-... 32 0.063
At3g07660.1 68416.m00918 expressed protein 31 0.11
At1g74650.1 68414.m08645 myb family transcription factor (cY13) ... 29 0.45
At1g16240.1 68414.m01945 syntaxin 51 (SYP51) identical to SP|Q9S... 29 0.59
At3g45280.1 68416.m04889 syntaxin 72 (SYP72) identical to syntax... 28 1.0
At1g76620.1 68414.m08915 expressed protein contains Pfam profile... 27 2.4
At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein ... 27 2.4
At1g21060.1 68414.m02634 expressed protein contains Pfam profile... 26 4.2
At5g61460.1 68418.m07712 structural maintenance of chromosomes (... 26 5.5
At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger) fa... 26 5.5
At3g05270.1 68416.m00575 expressed protein similar to endosome-a... 26 5.5
At1g71300.1 68414.m08228 Vps52/Sac2 family protein similar to SP... 26 5.5
At1g69480.1 68414.m07983 EXS family protein / ERD1/XPR1/SYG1 fam... 26 5.5
At1g16140.1 68414.m01934 wall-associated kinase, putative contai... 26 5.5
At1g05010.1 68414.m00502 1-aminocyclopropane-1-carboxylate oxida... 26 5.5
At5g24630.1 68418.m02909 expressed protein ; expression support... 25 7.3
At1g71270.1 68414.m08225 Vps52/Sac2 family protein similar to SP... 25 7.3
At5g02860.1 68418.m00229 pentatricopeptide (PPR) repeat-containi... 25 9.6
At4g18960.1 68417.m02793 floral homeotic protein AGAMOUS (AG) co... 25 9.6
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea... 25 9.6
At1g74260.1 68414.m08600 AIR synthase-related family protein con... 25 9.6
At1g47870.1 68414.m05327 E2F transcription factor-2 (E2F2) / tra... 25 9.6
>At1g79590.1 68414.m09280 syntaxin 52 (SYP52) identical to
Swiss-Prot:Q94KK7 syntaxin 52 (AtSYP52) [Arabidopsis
thaliana]
Length = 233
Score = 32.3 bits (70), Expect = 0.063
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 3 SKMSLNRNRDNDGTAREPLLGDDSPMNFGNNWTSTPKYTKYSKLANQTDSPNRFDIYDND 62
S+ +NR +D G R S +N N + + + D+ NR DN
Sbjct: 74 SEKEMNRRKDMVGNLRSKTNQVASALNMSN---FANRDSLFGTDLKPDDAINRVSGMDNQ 130
Query: 63 -ILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLELDEQ 102
I+ Q +++ Q+E L+ + ETV S K ++ + EL Q
Sbjct: 131 GIVVFQRQVMREQDEGLEKLEETVMSTKHIALAVNEELTLQ 171
>At3g07660.1 68416.m00918 expressed protein
Length = 841
Score = 31.5 bits (68), Expect = 0.11
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 6 SLNRNRDNDGTAREPLLGDDSPMNFGNNWTST-PKY--TKYSKLANQTDSPNRFDIYDND 62
S+ + D + + P D+ GN T+T P+Y TK + + N FD ++
Sbjct: 436 SIEKEEDGNVYSESPSQVPDNMAGEGNTATNTAPEYDVTKQENMLESESNQNSFDQVPSN 495
Query: 63 ILSMQDKLLGNQNEQLQ 79
I+ + GNQ+ Q +
Sbjct: 496 IIGIVPPAPGNQHPQFE 512
>At1g74650.1 68414.m08645 myb family transcription factor (cY13)
similar to myb protein cY13 GI:928930 from [Arabidopsis
thaliana]; contains Pfam profile: PF00249 myb
DNA-binding domain; identical to cDNA cY13 gene
GI:928929
Length = 330
Score = 29.5 bits (63), Expect = 0.45
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 33 NWTSTP--KYTKYSKLANQTDSPNRFDIYDNDILSMQDKLLGNQNEQLQVISET 84
NWTS+ K S N++ SP ++D+ L + G+ +E+L ++SET
Sbjct: 217 NWTSSSSSKPNTSSVSNNRSSSPGEGGLFDHHSLFSSNSESGSVDEKLNLMSET 270
>At1g16240.1 68414.m01945 syntaxin 51 (SYP51) identical to SP|Q9SA23
Syntaxin 51 (AtSYP51) {Arabidopsis thaliana}; supporting
cDNA gi|13811643|gb|AF355755.1|AF355755
Length = 232
Score = 29.1 bits (62), Expect = 0.59
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 3 SKMSLNRNRDNDGTAREPLLGDDSPMNFGNNWTSTPKYTKYSKLANQTDSPNRFDIYDND 62
S+ +NR +D G R + +N N + + DS +R DN
Sbjct: 73 SEKEMNRRKDMVGNLRSKANQMANALNMSN---FANRDSLLGPDIKPDDSMSRVTGMDNQ 129
Query: 63 -ILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLELDEQ 102
I+ Q +++ Q+E L+ + TV S K ++ + ELD Q
Sbjct: 130 GIVGYQRQVMREQDEGLEQLEGTVMSTKHIALAVSEELDLQ 170
>At3g45280.1 68416.m04889 syntaxin 72 (SYP72) identical to syntaxin
of plants 72 (SYP72) (GI:13811650)[Arabidopsis
thaliana]; identified as SYP72 in Sanderfoot, A.A., et
al, Plant Physiology 124:1558-69(2000); syntaxin 8 -
Homo sapiens, EMBL:AF115323
Length = 267
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 74 QNEQLQVISETVGSLKTVSKQIGLELDEQ 102
Q+E L +ISE + +LK +++ + ELD+Q
Sbjct: 179 QDEGLDIISEGLDALKNLARDMNEELDKQ 207
>At1g76620.1 68414.m08915 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547
Length = 527
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 26 SPMNFGNNWTSTPKYTKYSKLANQTD-SPNRFDIYDNDILSMQDKLLGNQNEQLQVISET 84
SP + ++ + +P+ + L + D SP+ F IL ++ L+ +QN L +I ++
Sbjct: 20 SPTSSSSSSSYSPRNRESMFLQSVVDASPSSFSSDRKSILPIEKTLIRHQNSSLCLIPKS 79
Query: 85 VGSLKTVSKQIGLEL 99
LK I +E+
Sbjct: 80 SEELKKEIASIEIEI 94
>At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 917
Score = 27.1 bits (57), Expect = 2.4
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 26 SPMNFGNNWTSTPKYTKYSK---LANQTDSPNRFDIYDNDILSMQDKLLGNQNEQLQVIS 82
SP G+ T P + K + N+ SP D D DIL + LL N+ EQ + I+
Sbjct: 844 SPSGNGSVVTHVPDPKQSRKGLIVINKVPSPEFNDPGDKDILEGESALLANKLEQDRGIT 903
Query: 83 ET 84
T
Sbjct: 904 ST 905
>At1g21060.1 68414.m02634 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547
Length = 505
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/79 (22%), Positives = 34/79 (43%)
Query: 21 LLGDDSPMNFGNNWTSTPKYTKYSKLANQTDSPNRFDIYDNDILSMQDKLLGNQNEQLQV 80
++G SP ++ +S+ K SP+RF Y LS++ +LL Q+ V
Sbjct: 1 MMGLCSPSPSSHDCSSSSPRNSEKKQNVIVASPSRFSTYTKPSLSIEKRLLTYQDSNCNV 60
Query: 81 ISETVGSLKTVSKQIGLEL 99
++ L+ + E+
Sbjct: 61 TPKSSEDLRKEIASLEFEI 79
>At5g61460.1 68418.m07712 structural maintenance of chromosomes
(SMC) family protein very strong similarity to SMC-like
protein (MIM) [Arabidopsis thaliana] GI:5880614;
contains Pfam profile PF02463: RecF/RecN/SMC N terminal
domain
Length = 1057
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 36 STPKYTKYSKLANQTDSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETVGSLKTVS 92
S P+ + QT+ P F + D+D ++ + L+ + QV++E K V+
Sbjct: 537 SRPRLNIPRHMVPQTEHPTIFSVIDSDNPTVLNVLVDQSGVERQVLAENYEEGKAVA 593
>At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger) family
protein / pentatricopeptide (PPR) repeat-containing
protein contains Pfam domains PF01535: PPR repeat and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1208
Score = 25.8 bits (54), Expect = 5.5
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 13 NDGTAREPLLGDDSPMNFGNNWTS---TPKYTKYSKL-ANQTDSPNRFDIYDNDI-LSMQ 67
NDG A P L FG T+ YT SK AN T + + +DI L +
Sbjct: 947 NDGVASNPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASESGRSDIILDVN 1006
Query: 68 DKLLGNQNEQLQVISETVGSLKTVSKQIG 96
G+Q++ + S T G T+ K+IG
Sbjct: 1007 SPERGDQDDPFALESSTAGLDDTLIKKIG 1035
>At3g05270.1 68416.m00575 expressed protein similar to
endosome-associated protein (EEA1) (GI:1016368) [Homo
sapiens]; similar to smooth muscle myosin heavy chain
(GI:4417214) [Homo sapiens; contains Pfam profile
PF05911: Plant protein of unknown function (DUF869)
Length = 615
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 44 SKLANQTDSPNRFDIYDNDILSMQDKLLGNQN 75
S + NQ+D R DN++ S +K++G +
Sbjct: 265 SSIDNQSDYSGRVSFSDNEMQSPSEKIIGKSS 296
>At1g71300.1 68414.m08228 Vps52/Sac2 family protein similar to
SP|P39904 SAC2 protein {Saccharomyces cerevisiae};
contains Pfam profile PF04129: Vps52 / Sac2 family
Length = 701
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 61 NDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLELDEQAV 104
N ILS + LL E++ IS + L+ S +GL L + V
Sbjct: 106 NCILSQMETLLSGFQEEIGSISSDIKILQENSMDMGLRLKNRRV 149
>At1g69480.1 68414.m07983 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 777
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 42 KYSKLANQTDSPNRFDIYDNDILSMQDKL 70
KY K+A++ S N I DN ++ D++
Sbjct: 307 KYEKIASRNASRNYMKIVDNSLIGSSDEV 335
>At1g16140.1 68414.m01934 wall-associated kinase, putative contains
similarity to wall-associated kinase 4 GI:3355308 from
[Arabidopsis thaliana]
Length = 690
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 23 GDDSPMNFGNNWTSTPKYTKYSKLAN 48
G+D+ +N ++ PK TK +KLA+
Sbjct: 301 GEDTCVNMAGRYSCVPKITKPAKLAH 326
>At1g05010.1 68414.m00502 1-aminocyclopropane-1-carboxylate oxidase
/ ACC oxidase / ethylene-forming enzyme (ACO) (EAT1)
Identical to 1-aminocyclopropane-1-carboxylate oxidase
(ACC oxidase) gb|X66719 (EAT1). ESTs gb|T43073,
gb|T5714, gb|R90435, gb|R44023, gb|AA597926,
gb|AI099676, gb|AA650810 and gb|29725 come from this
gene
Length = 323
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 33 NWTSTPKYTKYSKLANQTDSPNRFDIYDNDILSMQDKLLGNQNEQLQVISETVGSLKTVS 92
+W ST Y K+ ++N +D P+ D Y + K+ E L ++ E +G K
Sbjct: 85 DWEST-FYLKHLPVSNISDVPDLDDDYRTLMKDFAGKIEKLSEELLDLLCENLGLEKGYL 143
Query: 93 KQI 95
K++
Sbjct: 144 KKV 146
>At5g24630.1 68418.m02909 expressed protein ; expression supported
by MPSS
Length = 531
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 10 NRDNDGTAREPLLGDDSPMNFGNNWTSTPKYTKYSKLANQTDSPNRFDIY-DNDILSMQD 68
++D D T E + + SP + TPK ++ +T+ RF + D D + D
Sbjct: 253 DKDTDTTIAEQVTPEKSPKTKSKSSRKTPKEENCAQEILKTEGTQRFLYHADKDKDTDTD 312
Query: 69 KLLGNQNEQLQVISETVGS 87
++ + Q I + GS
Sbjct: 313 TIIAEEVTTDQKIKPSSGS 331
>At1g71270.1 68414.m08225 Vps52/Sac2 family protein similar to
SP|P39904 SAC2 protein {Saccharomyces cerevisiae};
contains Pfam profile PF04129: Vps52 / Sac2 family
Length = 707
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 61 NDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLELDEQAV 104
+ ILS + LL E++ IS + L+ S +GL L + V
Sbjct: 112 DSILSQMETLLSGFQEEIGSISSDIKILQEKSMDMGLRLKNRRV 155
>At5g02860.1 68418.m00229 pentatricopeptide (PPR)
repeat-containing protein contains Pfam profile
PF01535: PPR repeat
Length = 819
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 1 MKSKMSLNRNRDNDGTAREPLLG 23
+ S+ S NRNR G +R+P LG
Sbjct: 65 ISSQTSRNRNRTRIGKSRDPNLG 87
>At4g18960.1 68417.m02793 floral homeotic protein AGAMOUS (AG)
contains an ACG start codon (Riechmann, Ito, and
Meyerowitz, Mol Cell Biol, 1999); supported by cDNA
gi|16155|emb|X53579
Length = 252
Score = 25.0 bits (52), Expect = 9.6
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 59 YDNDILSMQDKLLGNQNEQLQVISETVGSL 88
Y + ++ +++ QN Q++ ET+GS+
Sbjct: 106 YQQESAKLRQQIISIQNSNRQLMGETIGSM 135
>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
similarity to myosin heavy chain [Rana catesbeiana]
GI:4249699; contains Pfam profile PF00787: PX domain
Length = 755
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 9 RNRDNDGTAREPLLGDD-SPMNFGNNWTSTPKY 40
R D D A P D SP+ G +W+S P++
Sbjct: 57 REPDTDSRASPPHRHDGRSPLPLGMDWSSPPRH 89
>At1g74260.1 68414.m08600 AIR synthase-related family protein
contains Pfam profiles: PF00586 AIR synthase related
protein, N-terminal domain, PF02769 AIR synthase related
protein, C-terminal domain
Length = 1387
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/45 (20%), Positives = 27/45 (60%)
Query: 58 IYDNDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLELDEQ 102
+Y ++S + ++ + + + V+ + +L+ +++++GL DEQ
Sbjct: 218 VYTQKLVSFETNVVPEEVKYVPVMEKGRKALEEINQEMGLAFDEQ 262
>At1g47870.1 68414.m05327 E2F transcription factor-2 (E2F2) /
transcription factor E2Fc (E2Fc) identical to
transcription factor E2Fc [Arabidopsis thaliana]
GI:19578311; contains Pfam profile PF02319:
Transcription factor E2F/dimerisation partner; identical
to cDNA E2F transcription factor-2 E2F2 GI:10443850
Length = 396
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 59 YDNDILSMQDKLLGNQNEQLQVISETVGSLKTVSKQIGLELD 100
Y D DKL GN+++Q + SLK V+ L+ D
Sbjct: 336 YKGDSAETSDKL-GNESDQKAPVGVDTPSLKIVTSDTDLKAD 376
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.308 0.127 0.350
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,528
Number of Sequences: 28952
Number of extensions: 105273
Number of successful extensions: 205
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 22
length of query: 104
length of database: 12,070,560
effective HSP length: 71
effective length of query: 33
effective length of database: 10,014,968
effective search space: 330493944
effective search space used: 330493944
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 52 (25.0 bits)
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