Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000588-TA|BGIBMGA000588-PA|undefined
         (382 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   2.8  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    22   6.4  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    22   6.4  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    22   6.4  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    22   6.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   6.4  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   8.4  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)

Query: 111 WYT-WSTEKRTDGSKATNYYICYDEPK 136
           W T W  E++T      N ++ YD PK
Sbjct: 315 WTTVWDDEQKTPYMYKGNQWVGYDNPK 341


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 264 LKREVPSEDENKVSTTTETRQRSVHRSKKIVREE 297
           LKR +P   +   +  TE ++ + +RS K +++E
Sbjct: 60  LKRVLPEALQTNCAKCTEKQRTAAYRSIKRLKKE 93


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 102 NSMFKFGENW-YTWSTEKRTDGSKATNYYICYDEPK 136
           N + +   +W Y W  E++       N ++ +D+PK
Sbjct: 301 NEVCELYSDWDYFWDDEQQVPHIVKGNQWLGFDDPK 336


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 102 NSMFKFGENW-YTWSTEKRTDGSKATNYYICYDEPK 136
           N + +   +W Y W  E++       N ++ +D+PK
Sbjct: 302 NEVCELYSDWDYFWDDEQQVPHIVKGNQWLGFDDPK 337


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 102 NSMFKFGENW-YTWSTEKRTDGSKATNYYICYDEPK 136
           N + +   +W Y W  E++       N ++ +D+PK
Sbjct: 302 NEVCELYSDWDYFWDDEQQVPHIVKGNQWLGFDDPK 337


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 267 EVPSEDENKVSTTTETRQRSV 287
           E PS   N+  TTTE+ + SV
Sbjct: 311 EKPSSSSNQEKTTTESAKISV 331


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
          homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 28 DQEDSRVDDEDTSRTES 44
          D E+  VDD+DT   ES
Sbjct: 38 DDENITVDDDDTDGRES 54


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.132    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,042
Number of Sequences: 317
Number of extensions: 3162
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 7
length of query: 382
length of database: 114,650
effective HSP length: 58
effective length of query: 324
effective length of database: 96,264
effective search space: 31189536
effective search space used: 31189536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)